RNA id: TU104320


Basic Information

Item Value
RNA id TU104320
length 1437
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G83608
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3748658 ~ 3750902 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGTCTTCTAGCAGAGCTCAAGTCTCATCTCTGACTCCACATTTTATTATCCGAGCTTGTCCTTGACTTCCTGTTAGCCAATCGTCTGCTGACGAGCTCAGTTACTTCAACACAAACTCCAAAGTTTCAGATCACTTGGACGTGATTTTTCCCACAGGCGCTGAATGTGTGCAATGCGAGAGGAACGCCTCCGCCGGCGCTCCTGGCTCAGCCCCCCGGCTCTGTAACCCAGGACTAACACACGGTGAGCAGGACCCGATCATTACAGCATGGCACAGAACAGAAGCAAAATAACCACAAACCTGGTGTATTACAGGTTCAATGTAAGGAAGACACTCGTCTGCTTCCCTGGCTCAGGGGGGCACGGGGGAACAGTGCGTCTGAGAACAGCCCACGCTGCAATCGGGTCCAGCGCCTGGGCACAGACGAGCCGTGACGCCCGAGTCCCTCTCATTTGTGTTGCACACCTGATATGAACTTCCTCCAGCACAccttcaatttgaaaataacactTTGCTTATATAACTGGTATCAGCctacaggacacacacacacacacacacacacacacacacacacacgttatgGTTTGGGAACATGTGAATGAACAAGTCCCTGCTGGACATGTGGCGTCTCCTTCCCCAATCCCTGTAAACCAGGACTTCCTGATCCACATGTTGTGCAACGCTCTTCCCAAGAGCCTCAGCCGTTCCTCGGCCCGCGGCGGCAGCTGCAGAGCGCCTCGCGTGTCAGGAAGGGCATCGTTTCACCCGTTCAGTTATTGTACAGTTATTGTATTGTGCCTCCGTTTCTATTACACTCACGTCTGTGAATAAAGCAGGACTAACAAGTATTTGGattcagccttttttttttttaaatccaacacTGAACAATTCAAACTTTCTTTTGAGGTTTTCCTGTGTACAAAAATACCCGTATGAAGCTCTCCACACAGTCCTTGAAAGAGGAAAGTGTGAGACGGACACACTGCAGTTCAGCAAGGGACCGAGAAGAGCGGAGGCTGAATCCATTCCAGGCCAAACCAGCTGCGATGGTTGTGATCCGTGTCCTTTGATCCTGATCACACGATTGACAGTACAGAGGCCCCGCTGGTTTTGCGGTTGCGATTACTTAATTACTACACTATCGTTCCGGGATGCGAATTTAAACATAACTAACTCCTATCGGCACTAACGCGGCACTATTGACAGCCGTCAAGAGCAACAGCACGTGGGGCGAGTCACATCACACCGAGACACACAGACTCCAGGGCCGGGGCCGAGGCCCTCACCCGGGTCTCTGCGCAGCGCCGTACACAGACCGTCAGCCGAGACAGAAGGTGGAAGTCGGTGGGTCTCTGTGCCGAGAGAAACGGGACAGGATGTGTCTCTCCCACTGCGCCGACGCTCGGTTCTGTCGGCCTTGGATTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104319 lncRNA downstream 1146 3747158 ~ 3747512 (-) True G83607
TU104311 lncRNA downstream 13451 3734677 ~ 3735207 (-) True G83602
TU104313 lncRNA downstream 13451 3734991 ~ 3735207 (-) False G83602
TU104305 lncRNA downstream 30468 3710153 ~ 3718190 (-) True G83596
TU104238 lncRNA downstream 326212 3422202 ~ 3422446 (-) True G83539
TU104383 lncRNA upstream 370347 4121249 ~ 4121486 (-) True G83667
TU104389 lncRNA upstream 374589 4125491 ~ 4125701 (-) True G83673
TU104504 lncRNA upstream 952353 4703255 ~ 4751235 (-) True G83761
TU104507 lncRNA upstream 988194 4739096 ~ 4739884 (-) True G83764
TU104518 lncRNA upstream 1071156 4822058 ~ 4859229 (-) True G83773
AMCG00021105 mRNA downstream 12305 3733756 ~ 3736353 (-) True AMCG00021105
AMCG00021092 mRNA downstream 459918 3287994 ~ 3288740 (-) True AMCG00021092
AMCG00021091 mRNA downstream 483447 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021090 mRNA downstream 1029739 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021086 mRNA downstream 1165041 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021110 mRNA upstream 28919 3779821 ~ 3801007 (-) True AMCG00021110
AMCG00021111 mRNA upstream 59509 3810411 ~ 3813043 (-) True AMCG00021111
AMCG00021109 mRNA upstream 65791 3816693 ~ 3825283 (-) True AMCG00021109
AMCG00021115 mRNA upstream 486135 4237037 ~ 4260026 (-) True AMCG00021115
AMCG00021116 mRNA upstream 511127 4262029 ~ 4281357 (-) True AMCG00021116
TU104173 other downstream 1066896 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 1289279 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 1770690 1973160 ~ 1977968 (-) True G83313
TU104502 other upstream 997879 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 2793590 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 8776191 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 8968962 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 9876433 13627335 ~ 13627747 (-) True G84952

Expression Profile