RNA id: TU110128


Basic Information

Item Value
RNA id TU110128
length 419
RNA type TUCP
GC content 0.50
exon number 1
gene id G88238
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28778315 ~ 28778733 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtccccaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgcttaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110122 lncRNA upstream 3122 28774871 ~ 28775193 (+) True G88232
TU110115 lncRNA upstream 80230 28697878 ~ 28698085 (+) True G88225
TU110035 lncRNA upstream 796188 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 1141559 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 1146661 27627052 ~ 27631654 (+) True G88150
TU110127 lncRNA downstream 52173 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 123665 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 142896 28921629 ~ 28969948 (+) True G88249
TU110198 lncRNA downstream 486094 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 491824 29270557 ~ 29271545 (+) False AMCG00021772
AMCG00021762 mRNA upstream 267500 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 268280 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 268841 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021758 mRNA upstream 439795 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021753 mRNA upstream 565389 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021759 mRNA downstream 49253 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021764 mRNA downstream 212857 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 228663 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 246830 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021768 mRNA downstream 297368 29076101 ~ 29095261 (+) True AMCG00021768
TU109668 other upstream 2581239 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3412338 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4600325 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7542235 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 7546827 21229852 ~ 21231488 (+) True AMCG00021561
TU110172 other downstream 282154 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 599842 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 599842 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1488669 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1610104 30388837 ~ 30394221 (+) False AMCG00021803

Expression Profile