RNA id: TU8228


Basic Information

Item Value
RNA id TU8228
length 1568
RNA type TUCP
GC content 0.40
exon number 2
gene id G5649
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24283482 ~ 24293329 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cattaaacaaaatgttttgctcCCAGCTAGAGTGATGTGTGTGGCAAACGACTCTATAGCCTATATTTTGGGGTTGGAACCTCAAGGGAAGTTCACCCTCGTCCAAAAACCTCACAAAAGTTGATTGCGTGTATCAGCTTGTCACGGATTGTGTTGATATCGCTGTATTTGGGAAGAATTAATCTTCCAAAGCAGGTCTGGGCCTCTGGCAGTCGGTCTTCTGCATCAGGACAGTCTGAGAGTAAAATCTTCAGAGAGCGCTTTGAGAAACCTCCCACAGGTACACGGTCCGTCCCATACAAGAAGACTAGAGAAGAATAAGTCATGTGAGGATGTGaggcaaataataataatctaactTAAATAATGTCAAGACAGTCATGATCAAGACCAAACCTACTCAGAAACCTTTTCTTGTTCTCTTCAGAGAGCTCAAAGAAAACAGCCCAGAAGTTCTTGATGAGCTCGTCAGAGGCAGAACAGTTTTCATAGGAAGCACACTgaagaagaagcagaaaaactcaggtactgtgaaatatttaaaaactgacaAGTTCCTTGAACACGTTTACCTGCTGAAGCTCATTCCACTCATATTTAGGAGAGCCTTGGAGAAGCTGCTGGAGTTCCTCAGGGTGGAACATGCTCCAGACATCGAGCGGACAGCCCTTAGAGAAACCTCTTGAGAAATGCTCGAACTGACTTTTTACTGACTTGTTGAAAATGAAGTCGACATACAAATCCACGTACTTCTGTctgcaaaaaaagaagagtTTTTATCATGCAGTGATTGATTGTCCATGACCGCCATCAGAGGACACTCCTCCCATCTCCATTGCTTTTTCATCATGAACTTCACTTCCCTTTAGCTCCTGCCTGGACTCATCATTGCCTGGACACTTCCACATGTTTATCACTACCTTATTAACTCCTTTATAACTCTATATGTCATAACATCAAGAGGATATTTAGAAAGCAAACGTTTTGTCAAGATAAGCTTGATCGAAACAATTATTTTGaacagatattttgaagagtTGGCAAATAGATCTGTTTCTACCTATTAGCTTTGGTCACTCGAGTCTGATCTCCATTTGTTACAAGATTTTTTCCTTTGACCTGAAGGAGGTGAATAAGAGCATAAATTTAAACAACAGCTATGTACACTAGTACATGTGGAACGTAGAAACTGTATTACCGTGAAATCAAAACTGAGCATATCCACTACATCGTCCTCGTCCTCCTCAAGAAGGCTTTTCAAAGTTCTAATGTGAGATTTttgaaatacaattataaatatgaCTTGCTCTGTAACACTACAATGTATAAAGTCTAATGTCTCGTTTTCTTTGATGGTTTACCTGGCCTCCACAGGAGACAGTTCCTCCAGATCATTCAGAGTGGGACTGTGCTGGAGGAGTTTCTTGAACAAGGCCAGTGGGAAGCCAATGTTTATATAATGATGGTTGTAGATCGCCATTCCACAGATAACACCAAGATAGTAAATATCTCGATTAGTTTCcgtattctgaaaaaaaaacaagaacaaaatagAACACTAGAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8105 lncRNA upstream 53019 24043936 ~ 24231752 (+) True G5605
TU8099 lncRNA upstream 53019 24044049 ~ 24231752 (+) False G5605
TU8062 lncRNA upstream 112679 24032891 ~ 24172092 (+) False G5605
TU8063 lncRNA upstream 112679 24032891 ~ 24172092 (+) False G5605
TU8094 lncRNA upstream 112679 24032891 ~ 24172092 (+) False G5605
TU8200 lncRNA downstream 12339 24305668 ~ 24315548 (+) True G5644
TU8290 lncRNA downstream 48663 24341992 ~ 24342299 (+) True G5689
TU8291 lncRNA downstream 52834 24346163 ~ 24346391 (+) True G5690
TU8297 lncRNA downstream 93195 24386524 ~ 24407457 (+) True G5696
TU8301 lncRNA downstream 152693 24446022 ~ 24447228 (+) True G5700
XM_043235113.1 mRNA upstream 2953 24279517 ~ 24281818 (+) True LOC122341621
XM_043252535.1 mRNA upstream 18936 24251353 ~ 24265835 (+) True pdcd11
XM_043239787.1 mRNA upstream 34473 24242694 ~ 24250298 (+) True taf5
XM_043246758.1 mRNA upstream 66765 24215811 ~ 24218006 (+) True msx1b
XM_043251223.1 mRNA upstream 92664 24184081 ~ 24192107 (+) False caly
XM_043240219.1 mRNA downstream 4781 24298110 ~ 24305263 (+) True ppm1kb
XM_043240211.1 mRNA downstream 4781 24298110 ~ 24305263 (+) False ppm1kb
XM_043241268.1 mRNA downstream 12410 24305739 ~ 24313156 (+) True abcg2d
XM_043249606.1 mRNA downstream 30816 24324145 ~ 24325479 (+) True LOC122352094
XM_043246594.1 mRNA downstream 32684 24326013 ~ 24341162 (+) True papss1
TU8005 other upstream 730146 23546442 ~ 23554625 (+) False G5559
TU8004 other upstream 730146 23546496 ~ 23554625 (+) False G5559
unassigned_transcript_108 other upstream 1225668 23059032 ~ 23059103 (+) True trnae-cuc_5
unassigned_transcript_107 other upstream 2400263 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 2649719 21632215 ~ 21635052 (+) True G5037
unassigned_transcript_109 other downstream 374206 24667535 ~ 24667607 (+) True trnar-ccg_14
TU8452 other downstream 410519 24703848 ~ 24704319 (+) True G5817
TU8550 other downstream 691797 24985126 ~ 25204896 (+) True LOC122329747
TU8566 other downstream 849193 25142522 ~ 25145117 (+) False LOC122349019
TU8585 other downstream 939095 25232424 ~ 25269353 (+) True G5914

Expression Profile