RNA id: XM_043252535.1


Basic Information

Item Value
RNA id XM_043252535.1
length 5337
RNA type mRNA
GC content 0.49
exon number 36
gene id pdcd11
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24251353 ~ 24265835 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGATTCTTTTCCTCGCGGTATAATCTTAAATCCCGCCTCTCAGCGTTCGCGTCCGGGTCGCACAGATCGCGTGTTTCCGAAGAACATGTGAGATTCAGCTCCACGCACTATTTACACCTATCTACGCAACGTTTTATAGCTGGAATTCATTAGAGCCGTTACATTTGGGTGGAATGGCGTCTACGGATGAAGATTTTCCCCGAGGGGGACAGAGAAGAAAACAACCGAATCCAAAAGTGTTAAGGAACATGAAGTGGACAATCTTTTCCAAACGCCTGAAAAGAAGggtaaaaagaggaaaaatgtCGCACAGCAGAATGAACAGAAAGCGACCAAGCAACAGAAAGTGGAGAGGGGGGATTTAAAACTGAATGCTACCACTGCTGTGGAAATTCTACACCTTCGGAATCTGAGTGTTGGCACACTGATGCTGGGTTGTGTGAAGCAAGTAACGGACTTTGAGGCGGTTGTTGGTTTTCCCAGCGGTCTTGTCGGTTACCTTCAAATCTGCAACATTTGCGACGCCTATTCCAGTATCCTTATGGACAATCTGGAGTCTGAAGACCAATTAAAGGAAGTCGTCCCTCTCGCACAGCTGCTTACTCCTGGAACGCTGATCAGATGCGTTGTGCTGTCTCTCGACTCGGTTAAAGAGGGTCTTATAAGCCTTAAAGTGTCCGTCAACCCTAAAGATGTTAACAAGGTGTTAAATTCAGGTTCTTTGAAACCTGGAATGACGCTGAGTGGTTGTGTGGAGAGTGTGGAAGATCACGGCTTCCTGGTTGACATCGGCATCAGTGGCACTAAAGCTTTCCTGCCCAAACAAAGCACATCCTCAAAAAAAGATATGAATGTGGGTCAGTACGTGACGATCCTGCTAGAGGAAGTCAAGAACGACGGACGTGTGGTGCGTCTGTCCCAGGATCCCCAGGCTCTTAGAAAGGCCTTTGCAGTCGCTCAGCAAGGATGGACTCTAGACACTCTCCTGCCGGGACTTCTGATCCAGGGAAAGATCAAGAGGGTCACTCCTCATGGGCTTATCGTGACGTACCTTTCATCTTTTACTGGCGTGGTTGATTTTCTGCACCTTGATGAGGACAAAGCATCTACCTACAGTGCAGGAGATGAAGTCGTGGCGCGGGTTCTGTATGTGGATCCGTCCACGAGGCATGTGGGCCTGTCCCTGCGTGGACATCTCCTGCCACCAAGCGGCGCTGTGCTGGATATCGCCTCGAGCGAGCGGATCAGCGAGGTGGTGGAGGGCTGCAAGATGACTGCTTTGCACCATCAGTCTGGAGCTTTGATGAAGATGCCTGACGGGACCGCAGCCTTTGTGCATAAAAACCTCTTGAAGGAGGCCAGTGAAGAATTCAACCCAAACCGCTTGCTTACCCAGCCTGAGCACACTCTGAGAATCATAGACTACAGTCCTGTGGAGCAAATGCACATAGGGACACTGCGCAGgaGCACTGTCGAAGTAGAGTTTTTCAGATATCAAGACATCAAAGTGGGGCAAATTCTTGAGGGTACAGTTACGTATTTGCAGAAATACGGTGCTTATGTGAGGATAACGGACCACATCAGAGGATTTATACCCAATATTCACCTGGCCGATGTCGTCCTAAAGAACCCAGAGAAGTTGTTCACTAGTGGACGGCAGGTCAAGTGCAGGGTGCTGTCAGTAGACGCTCAGCAGAAGAAGTTGTGCCTGACCAGAAAGAAGGCCCTTGTCGAGTCTACGCTTCCTCTCTTCCTGTCCTACGCTGATGCCAAGGTGGGCCGCATCTCCCACGGCTACATCGTTTCTGTGAAGGACTTTGGCTGCATCGTTCGTTTCTATGGAGATGTGAAGGGTCTGGTTCCTATGCAAGAGCTGTCTAAAGATTTTGTGACTAATCCAGAAGAGCTCTTCTTCGTTGGCCAGgtTGTCCAGGCCAAAGTCTTGACGTGTACTGAAGAAAAGAACTTGCTACGTTTATCCTTCAGGGCCATTAATGAGGGAGACATAAATGAGGTGCAGACTGCCGATTTTCAGTTTGAGGTTGGAAAGACGGTTGAAGTCAAAGTGTACCGCAAAGTCCTGGATGGTCTGGAGGTGTCCATTGTTCCTGAGGAGGTGCCAGCTTTCATACCCACAGTGCACCTCTCTGACCATGTGACCAACTGCCTTCCCATGTGGACGGTGCTGGAGGAGGGTGACACTTTCTCTGTGACGTGTCTCAGCAAGACCAAGAAGGGCATTATTCTCACTAGGAAACCCCTGCTGAAGGCCTCTCTGGAGGACGGCAGCATGCCCAAAATCTTCTCTGAGCTCCAGGTGGGGCTGAATATGGTCGGCTGGGTGAAGAGCATCATGGATTATGGACTCTTCATCCATTTCCCCTATGGACTCTTCGGCCTCGCTCCTAAATCTGTCATGTGTGACGAGTTCATCACGGACACCTCGAACATCTTTAACATCGGCCAGACGGTTGTTGCCAAAGTCACTAATTTGGACCATGAGAACCACAGGTTTCTGGTCAGTCTGAAGGTCTCAGAATTAAGTCTCTTAGAGGAAGGGTCCCAGGCCAGACTGGTCCAGGGTCTGAAGGAGAGGAAGGCCATCTTTGATATCAGAAGCGATTCTGAGCTCTCAGGTTTTTCACTTGGAGATAAACTGAAGGTGACGGTGGGAGAGAGCAAAGAGGATGGCACGGTCACGCTGACCTCGGATAAGCTCAGCGAAGCCAGTGTATTGGTTTCAAAGTACCACACAGAAGGTGTGAATGTGAGTCCAGGCTGCAAGCTCACTGCACTGGTTCTCCATGTTGACCTTTTCAAGTCCGAGGTCCATGTGACTCTGCTTCCAGAGCTGACCGGAGCGACAAAGAAAAAGTTGGAAAAAGGCTCCAAACTGTCTGCCACTATCCAGTTCACCGACAAAGACTTTGCTGTCGTCTCATTGGGCGACACCGGTCACCTGACCATCATTTCCACTCACCTTCACATAAATGACGTCTTAAATTCAAAGAAGTTTATTGTGGGTTCCTCTCTGGATGTGACCGTGGAGGAGCCCAGCTGTGAGGCGTTGGGAGGACTTCCTCTTGCCGAGTATCAGAAAGAGAACGAGCGGAAGGGCAGATCTACGAGCACAGGTGTTAGGGAATTGATGACAGTGAAGGTAAAGAAGGTGAAGCCCATGGAAGTGACTGTGACGCTGCCGTCCGGGACCACAGGAAGTGTCCATGTATCTCAGATCAGTGAGTCGCCTGCAGTCGGCAGCTTCCCAACATCGACCCTGAAGATCGGGAGCGAGGTCAAAGCCAGAGTGATTGGAGCACGCTCAGTTCACACTCGCAAGTTCCTGCCATTCTCTCATCCCGACTTTAGTGTTTCTATCCCTGTACTCTCTCTACTGCCCAGCATAACCGGTTCTAAAGgaagaaatgtgaaaattgaGAAATTAAACTTCAAACCTGGAGATGACGTTATATGCTTTGCATCAAAGTTCGACAAAGAATTACAATGCTTAGATGTTCATGTGAAGCCCAACGTCATGGGAACTGTCGATCTGTTGTCCATGATTAAGAAACCAAGCCATGCTCAACACCCGCACACGCTTTTTAAAGTGGGACAGACCATTTCTGCAAAGGTTGTTCGTCTTGGTACCAGCAAGCCCTTTCGTCTTTCTTTGTCACTCATAGGGACATACAAGCTGGAGCCAGGGATGATCACCATGGCGAAGATTTGGAAAATTGTGCCTCACATGGGAATGTTTCTCCAACTACCATTCGGGAATAGGGGTTTGGTCAGTGTAACGGATCTCTCTGATGAGTTCACAGCAAACCCGCTAGAGCCCTACAAGCTGGGCCAACTAGTCCGGTGCTACATTATTGAGATGAAAGGCGTATACTTCAATGCTTCGCTGCGTCCTTCCAGATTGTACAGAGACCACAATAAGAATATTACAGATCCAGAAATTCAGTCAATTTTGGATGTAAAGAGTGGCCAGATTGTCCGGGGTTATGTGACATCTTTTGTGAATGTAGGCATCTTCGTGAGGCTATCAAGGGCTGTCACAGGAAGAGTTGTTTTACGGAAAGCTACAAAATACTTTGTGGAGAATGAAAAACCGCTTTCCGAAAACATTCCTGTGAATTTTTTGGTGACAGCCAAGGTTCTCAGTGTGAACACCAAGGACGAGCACGTGAAGCTTTCGCTGCTGACAAAGGACACTGGTGAACCAGATATCCTCCCAGAATCCCTCGAGCTTCCACTGCGTCAGATAAGAGAGCGAGAGCTGAAGAAAGAGCAGGCGCAAAAAGGTGACGAGAAAGCCACCAAGAGGAAGCAGGTTAATTCCGatagCCAGCAACAAGACGatgagacagatggacagacgattaaaaagaaaaaagttacaCAGGAAAAGCAAGAACATGATGAGGAAGCCCCTGACATGAAGCAGGTTAATCCTGGGAGCcagCAACAAGACGatgagacagatggacagacgattaaaaagaaaaaggtccCACAGAAAAAGCAAGAACATGACGAGGAAGCCACCAACATGAAGCAGGTTAATCCTGGGAGCcagCAACAAGACAATGAGACAAATGGAcagacaattaaaaagaaaaaggtccCACAGAAAAAGCAAGAACATGACGAGGAAGCCCCCAAGAATTCCGatagCCAGCAACAAGACGatgagacagatggacagacgattaaaaagaaaaaagttaaacagAAAAAGCAAGAACATGACGAGGAAGCCCCCGACATGAAGCAGGTTAATCCTGGGAGCcagCAACAAGAGAatgagacagatggacagacgattaaaaagaaaaaaaacacagaaaagaaggaaacattaaaaagaaaactaaaacgGAGGATAATGACAGTGGTGTAGAAGTGTTCTTCAGAGAGGAGGACAAAAAGCAGTTGTGTAAAAATCAAGAACAAGTAAAGGGTAAGCAGAAGGCAGTGGAACCAGAACGGCTGCAGGTTTCTTTTGGCTTCCCATGGGAATCCACACTGTGCTCGTTAACACCTGTAGCCGCTGTAGACGACACCCATGATTCCAGTGAGGATGAGCAGGAAGTGAACAAGGCGGTGAAAAAGACCCGTAAAGAGCTGAAGCAGGAGGAGCAGAACGCGGAGCAGCAGCTCAGCAAGCTGGAGGCGGAGCTCATGGACACCTCCACGCGTCCAGACAGCACCGTGGCGTTTGAGCGCCTGCTCCTGTCATCCCCAAACAGCTCCCTCATCTGGCTGCAGTACATGGCTTTCCACCTGCAGGCCACGCAGATCGAGCAGGCGCGCGCCGTCGGCTAGAAAGCCC

Function

GO:

id name namespace
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
K14792 RRP5, PDCD11; rRNA biogenesis protein RRP5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8105 lncRNA upstream 19601 24043936 ~ 24231752 (+) True G5605
TU8222 lncRNA downstream 17647 24283482 ~ 24285979 (+) True G5649
TU8227 lncRNA downstream 17647 24283482 ~ 24292073 (+) False G5649
TU8223 lncRNA downstream 18936 24284771 ~ 24285979 (+) False G5649
TU8229 lncRNA downstream 18936 24284771 ~ 24285979 (+) False G5649
TU8236 lncRNA downstream 21858 24287693 ~ 24295237 (+) True G5650
XM_043239787.1 mRNA upstream 1055 24242694 ~ 24250298 (+) True taf5
XM_043246758.1 mRNA upstream 33347 24215811 ~ 24218006 (+) True msx1b
XM_043251223.1 mRNA upstream 59246 24184081 ~ 24192107 (+) False caly
XM_043251224.1 mRNA upstream 59246 24184367 ~ 24192107 (+) True caly
XM_043241366.1 mRNA upstream 519107 23684795 ~ 23732246 (+) True sorcs3
XM_043235113.1 mRNA downstream 13682 24279517 ~ 24281818 (+) True LOC122341621
XM_043240219.1 mRNA downstream 32275 24298110 ~ 24305263 (+) True ppm1kb
XM_043240211.1 mRNA downstream 32275 24298110 ~ 24305263 (+) False ppm1kb
XM_043241268.1 mRNA downstream 39904 24305739 ~ 24313156 (+) True abcg2d
XM_043249606.1 mRNA downstream 58310 24324145 ~ 24325479 (+) True LOC122352094
TU8005 other upstream 696728 23546442 ~ 23554625 (+) False G5559
TU8004 other upstream 696728 23546496 ~ 23554625 (+) False G5559
unassigned_transcript_108 other upstream 1192250 23059032 ~ 23059103 (+) True trnae-cuc_5
unassigned_transcript_107 other upstream 2366845 21884436 ~ 21884508 (+) True trnak-uuu
TU7172 other upstream 2616301 21632215 ~ 21635052 (+) True G5037
TU8228 other downstream 18936 24284771 ~ 24293329 (+) False G5649
unassigned_transcript_109 other downstream 401700 24667535 ~ 24667607 (+) True trnar-ccg_14
TU8452 other downstream 438013 24703848 ~ 24704319 (+) True G5817
TU8550 other downstream 719291 24985126 ~ 25204896 (+) True LOC122329747
TU8566 other downstream 876687 25142522 ~ 25145117 (+) False LOC122349019

Expression Profile