Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043246758.1 |
| length | 1299 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 2 |
| gene id | msx1b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056699.1 |
| NCBI id | CM032068.1 |
| chromosome length | 31761587 |
| location | 24215811 ~ 24218006 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0043523 | regulation of neuron apoptotic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09341 | MSX; homeobox protein MSX |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU8061 | lncRNA | upstream | 43719 | 24044049 ~ 24172092 (+) | False | G5605 |
| TU8070 | lncRNA | upstream | 43719 | 24044049 ~ 24172092 (+) | False | G5605 |
| TU8086 | lncRNA | upstream | 43719 | 24167129 ~ 24172092 (+) | False | G5605 |
| TU8106 | lncRNA | upstream | 47116 | 24165409 ~ 24168695 (+) | False | G5606 |
| TU8100 | lncRNA | upstream | 47748 | 24040518 ~ 24168063 (+) | False | G5605 |
| TU8222 | lncRNA | downstream | 65476 | 24283482 ~ 24285979 (+) | True | G5649 |
| TU8227 | lncRNA | downstream | 65476 | 24283482 ~ 24292073 (+) | False | G5649 |
| TU8223 | lncRNA | downstream | 66765 | 24284771 ~ 24285979 (+) | False | G5649 |
| TU8229 | lncRNA | downstream | 66765 | 24284771 ~ 24285979 (+) | False | G5649 |
| TU8236 | lncRNA | downstream | 69687 | 24287693 ~ 24295237 (+) | True | G5650 |
| XM_043251223.1 | mRNA | upstream | 23704 | 24184081 ~ 24192107 (+) | False | caly |
| XM_043251224.1 | mRNA | upstream | 23704 | 24184367 ~ 24192107 (+) | True | caly |
| XM_043241366.1 | mRNA | upstream | 483565 | 23684795 ~ 23732246 (+) | True | sorcs3 |
| XM_043232697.1 | mRNA | upstream | 939043 | 23205389 ~ 23276768 (+) | True | cfap58 |
| XM_043239891.1 | mRNA | upstream | 1068511 | 23064496 ~ 23147300 (+) | False | sh3pxd2aa |
| XM_043239787.1 | mRNA | downstream | 24688 | 24242694 ~ 24250298 (+) | True | taf5 |
| XM_043252535.1 | mRNA | downstream | 33347 | 24251353 ~ 24265835 (+) | True | pdcd11 |
| XM_043235113.1 | mRNA | downstream | 61511 | 24279517 ~ 24281818 (+) | True | LOC122341621 |
| XM_043240219.1 | mRNA | downstream | 80104 | 24298110 ~ 24305263 (+) | True | ppm1kb |
| XM_043240211.1 | mRNA | downstream | 80104 | 24298110 ~ 24305263 (+) | False | ppm1kb |
| TU8005 | other | upstream | 661186 | 23546442 ~ 23554625 (+) | False | G5559 |
| TU8004 | other | upstream | 661186 | 23546496 ~ 23554625 (+) | False | G5559 |
| unassigned_transcript_108 | other | upstream | 1156708 | 23059032 ~ 23059103 (+) | True | trnae-cuc_5 |
| unassigned_transcript_107 | other | upstream | 2331303 | 21884436 ~ 21884508 (+) | True | trnak-uuu |
| TU7172 | other | upstream | 2580759 | 21632215 ~ 21635052 (+) | True | G5037 |
| TU8228 | other | downstream | 66765 | 24284771 ~ 24293329 (+) | False | G5649 |
| unassigned_transcript_109 | other | downstream | 449529 | 24667535 ~ 24667607 (+) | True | trnar-ccg_14 |
| TU8452 | other | downstream | 485842 | 24703848 ~ 24704319 (+) | True | G5817 |
| TU8550 | other | downstream | 767120 | 24985126 ~ 25204896 (+) | True | LOC122329747 |
| TU8566 | other | downstream | 924516 | 25142522 ~ 25145117 (+) | False | LOC122349019 |
