Fish Single-cell RNA Database

CELL TYPE: Brain ventricular zone cells

Distribution of Brain ventricular zone cells in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000020871	ptprz1b	4: 4834085 ~ 4926061 (+)
ENSDARG00000102340	ptn	4: 1301436 ~ 1360495 (-)
ENSDARG00000036427	slc3a2a	7: 20524064 ~ 20530447 (+)
ENSDARG00000015349	mfge8a	7: 48788147 ~ 48805181 (-)
ENSDARG00000083794	CU467822.1	7: 14281093 ~ 14281225 (+)
ENSDARG00000013730	slc4a4a	5: 45746457 ~ 45877387 (-)
ENSDARG00000043589	ca4a	5: 2241723 ~ 2282256 (-)
ENSDARG00000091579	si:ch211-66e2.5	3: 46457450 ~ 46473737 (+)
ENSDARG00000103109	chl1b	6: 44812444 ~ 44977428 (+)
ENSDARG00000018534	slc6a9	2: 33335911 ~ 33422798 (+)
ENSDARG00000099776	glula	2: 18988407 ~ 18992350 (+)
ENSDARG00000023713	aqp1a.1	2: 2737422 ~ 2749333 (+)
ENSDARG00000019856	atp1a1b	9: 35901554 ~ 35922201 (+)
ENSDARG00000001676	gpm6bb	9: 54751201 ~ 54840209 (-)
ENSDARG00000094730	acbd7	16: 28596555 ~ 28599328 (+)
ENSDARG00000095906	CR848047.1	16: 29212421 ~ 29227002 (+)
ENSDARG00000010710	msi1	8: 39607466 ~ 39647216 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000056774	gpr37l1b	8: 21265263 ~ 21268303 (-)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000053262	atp1b4	14: 33458294 ~ 33469953 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000041623	mt2	18: 17534627 ~ 17535979 (+)
ENSDARG00000057913	syt11a	19: 23982466 ~ 24034710 (+)
ENSDARG00000099793	cspg5b	19: 19278082 ~ 19339337 (-)
ENSDARG00000043446	efhd1	15: 40188076 ~ 40212204 (+)
ENSDARG00000056732	her4.1	23: 21452557 ~ 21453614 (-)
ENSDARG00000027065	slc38a3a	11: 34824099 ~ 34914857 (+)
ENSDARG00000039647	slc6a1b	11: 997100 ~ 1024483 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000060756	abhd6a	11: 42062067 ~ 42099645 (-)
ENSDARG00000043148	slc1a3b	10: 36558804 ~ 36592486 (-)
ENSDARG00000070913	sox2	22: 37347896 ~ 37349967 (-)
ENSDARG00000042690	s1pr1	22: 16038495 ~ 16042243 (-)
ENSDARG00000020708	mdkb	25: 7872135 ~ 7880878 (+)
ENSDARG00000102453	slc1a2b	25: 37366698 ~ 37407757 (+)
--	npas3	--
--	xloc-003690	--
--	zgc:165461	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Brain ventricular zone cells.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE176129 (pdgfrb-positive)	Danio rerio	whole body	17	Brain ventricular zone cells	baseline	5dpf, FACS-isolated pdgfrb-positive cells	ENSDARG00000015349 (mfge8a)	marker	DOI:10.7554/eLife.44431

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Brain ventricular zone cells

Distribution of Brain ventricular zone cells in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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