Fish Single-cell RNA Database

CELL TYPE: Cardiac mesoderm

Distribution of Cardiac mesoderm in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000027249	btg1	4: 16536173 ~ 16545085 (-)
ENSDARG00000003512	anks1b	4: 17886838 ~ 18202291 (-)
ENSDARG00000027316	tcp11l2	4: 16725960 ~ 16742893 (+)
ENSDARG00000031228	podxl	4: 11732156 ~ 11751037 (-)
ENSDARG00000018820	flncb	4: 10066840 ~ 10130349 (+)
ENSDARG00000101706	csrp3	7: 16548219 ~ 16562202 (-)
ENSDARG00000052011	rrad	7: 44960188 ~ 44963154 (-)
ENSDARG00000076348	mylk3	7: 41821311 ~ 41858513 (-)
ENSDARG00000013526	svep1	7: 24251367 ~ 24357169 (+)
ENSDARG00000001975	hsd11b2	7: 35112052 ~ 35126374 (-)
ENSDARG00000079578	rbpms2b	7: 48252638 ~ 48263633 (-)
ENSDARG00000030176	zgc:92429	7: 23727768 ~ 23745984 (-)
ENSDARG00000017927	cx36.7	7: 12835048 ~ 12836225 (+)
ENSDARG00000011615	mybpc3	7: 31838320 ~ 31899925 (+)
ENSDARG00000103515	vcana	5: 46424437 ~ 46486028 (+)
ENSDARG00000089769	hapln1a	5: 46490622 ~ 46505702 (-)
ENSDARG00000024894	tbx5a	5: 72264192 ~ 72289648 (-)
ENSDARG00000032976	cmlc1	5: 64167620 ~ 64168415 (-)
ENSDARG00000078272	NA	5: 11502578 ~ 11573490 (-)
ENSDARG00000001803	kcnh6a	3: 31728871 ~ 31784082 (-)
ENSDARG00000059743	tmem98	3: 39099716 ~ 39110228 (+)
ENSDARG00000040526	s1pr5a	3: 19364948 ~ 19368435 (-)
ENSDARG00000031325	tmed1a	3: 47222096 ~ 47235997 (-)
ENSDARG00000115545	clec19a	3: 31177972 ~ 31188131 (+)
ENSDARG00000003081	mybphb	6: 55032439 ~ 55082533 (+)
ENSDARG00000079198	usp13	6: 29410986 ~ 29469208 (+)
ENSDARG00000075557	apcdd1l	6: 49650170 ~ 49673476 (-)
ENSDARG00000008030	myl9b	6: 1787160 ~ 1799561 (+)
ENSDARG00000039256	spega	6: 21095918 ~ 21155195 (+)
ENSDARG00000052708	tnni1b	6: 54805136 ~ 54826061 (-)
ENSDARG00000003684	obsl1a	6: 21157195 ~ 21189295 (-)
ENSDARG00000103589	gata6	2: 4207209 ~ 4217887 (+)
ENSDARG00000030722	xirp1	2: 23749614 ~ 23768832 (-)
ENSDARG00000012914	arhgef4	2: 16198735 ~ 16359042 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000079782	myh7l	2: 24274293 ~ 24289726 (-)
ENSDARG00000029718	p2rx3b	1: 44746154 ~ 44758388 (+)
ENSDARG00000099729	pcdh10a	1: 12763461 ~ 12797410 (+)
ENSDARG00000031164	tuba8l2	1: 5402476 ~ 5419116 (+)
ENSDARG00000008305	hand2	1: 38193147 ~ 38195012 (-)
ENSDARG00000028213	ttn.2	9: 42894845 ~ 43073960 (-)
ENSDARG00000095675	ccdc141	9: 43074531 ~ 43142677 (-)
ENSDARG00000102176	pla1a	9: 21214940 ~ 21226132 (+)
ENSDARG00000042018	fhl2a	9: 6578580 ~ 6601988 (+)
ENSDARG00000093440	tnfaip6	9: 22764235 ~ 22779813 (+)
ENSDARG00000058656	desma	9: 7515864 ~ 7539326 (-)
ENSDARG00000004930	lmo7a	9: 21893757 ~ 21970067 (-)
ENSDARG00000000563	ttn.1	9: 42732992 ~ 42873700 (-)
ENSDARG00000005150	tbx20	16: 42509011 ~ 42523744 (-)
ENSDARG00000101989	thrap3a	16: 35870456 ~ 35901707 (+)
ENSDARG00000104752	NA	16: 9680908 ~ 9694822 (-)
ENSDARG00000058548	bves	16: 7662609 ~ 7681144 (+)
ENSDARG00000021184	rbfox1l	16: 31900127 ~ 31919568 (-)
ENSDARG00000036987	has2	16: 15369634 ~ 15387459 (-)
ENSDARG00000088881	si:dkeyp-69b9.3	16: 13505064 ~ 13516745 (-)
ENSDARG00000090190	bcam	16: 24030272 ~ 24135573 (-)
ENSDARG00000029472	afdna	20: 43120132 ~ 43353097 (-)
ENSDARG00000024537	emilin1a	20: 34845672 ~ 34865031 (+)
ENSDARG00000052336	ociad2	20: 23238833 ~ 23244193 (+)
ENSDARG00000090637	myh6	20: 53577502 ~ 53583436 (+)
ENSDARG00000020594	txlnba	20: 36845787 ~ 36887516 (-)
ENSDARG00000041779	trdn	20: 40150612 ~ 40231379 (+)
ENSDARG00000053110	pkib	20: 40371897 ~ 40451115 (-)
ENSDARG00000057317	nexn	8: 18515711 ~ 18537882 (-)
ENSDARG00000091253	smyd1b	8: 1015243 ~ 1051527 (-)
ENSDARG00000008433	unc45b	8: 11204059 ~ 11229523 (-)
ENSDARG00000006901	si:ch1073-459j12.1	8: 44759576 ~ 44800841 (+)
ENSDARG00000029439	atp2a2a	8: 11687254 ~ 11744994 (+)
ENSDARG00000092123	si:dkey-20d21.12	8: 26382604 ~ 26388090 (-)
ENSDARG00000019096	myl7	8: 40457107 ~ 40464935 (-)
ENSDARG00000102490	asb2b	17: 53311243 ~ 53318153 (+)
ENSDARG00000003706	ryr2b	17: 20009132 ~ 20118244 (-)
ENSDARG00000037995	gdf3	17: 4239437 ~ 4252221 (-)
ENSDARG00000071090	actn2b	17: 20122019 ~ 20143946 (-)
ENSDARG00000005232	ccdc85ca	17: 17914369 ~ 18025691 (+)
ENSDARG00000018004	nkx2.5	14: 24241241 ~ 24244034 (+)
ENSDARG00000037558	asb12b	14: 9265741 ~ 9281232 (-)
ENSDARG00000061603	sorbs2b	14: 29807097 ~ 29906209 (-)
ENSDARG00000071562	mtus1a	14: 30285613 ~ 30357641 (+)
ENSDARG00000053279	apln	14: 33722950 ~ 33757715 (+)
ENSDARG00000041257	smtnl1	14: 17108003 ~ 17121713 (-)
ENSDARG00000057949	slc43a3b	14: 17125428 ~ 17162558 (+)
ENSDARG00000056322	ldb3a	13: 22476742 ~ 22552687 (+)
ENSDARG00000055618	acta1b	13: 24279021 ~ 24284442 (+)
ENSDARG00000039066	klhl31	13: 2338761 ~ 2350762 (+)
ENSDARG00000078989	alpk3a	18: 26719787 ~ 26755230 (+)
ENSDARG00000089913	cacna1g	12: 27704015 ~ 28073562 (+)
ENSDARG00000099974	ldb3b	12: 26023948 ~ 26064562 (-)
ENSDARG00000078696	synpo2lb	12: 26408351 ~ 26430507 (-)
ENSDARG00000010018	qki2	12: 34953038 ~ 35019519 (+)
ENSDARG00000055630	foxh1	12: 13722385 ~ 13730501 (-)
ENSDARG00000000068	slc9a3r1a	12: 33484458 ~ 33537126 (+)
ENSDARG00000079462	si:ch211-131k2.3	12: 6002715 ~ 6006865 (+)
ENSDARG00000057206	nmt1b	12: 15666949 ~ 15676285 (+)
ENSDARG00000102995	rbm24a	19: 46113828 ~ 46148977 (+)
ENSDARG00000076126	actc1a	19: 47549568 ~ 47555956 (-)
ENSDARG00000010767	epha4l	15: 41945310 ~ 42039192 (-)
ENSDARG00000011400	tnnc1a	23: 4890693 ~ 4895876 (+)
ENSDARG00000020610	tnnt2a	23: 5653224 ~ 5685172 (-)
ENSDARG00000058543	lama5	23: 9567334 ~ 9768700 (-)
ENSDARG00000035322	myh7bb	23: 18722715 ~ 18757078 (+)
ENSDARG00000036894	aimp1b	23: 45402128 ~ 45407724 (-)
ENSDARG00000017821	gata5	23: 7379728 ~ 7391028 (+)
ENSDARG00000104441	hspb7	23: 24258323 ~ 24263474 (-)
ENSDARG00000079637	alpk2	21: 10866421 ~ 10880565 (+)
ENSDARG00000008880	usp28	21: 23050310 ~ 23110930 (-)
ENSDARG00000055373	sema3fb	11: 35447417 ~ 35575830 (-)
ENSDARG00000105389	mmel1	11: 40530748 ~ 40605868 (+)
ENSDARG00000013422	slc8a1a	11: 30535943 ~ 30612166 (-)
ENSDARG00000034808	kcnip1b	10: 22003750 ~ 22031921 (+)
ENSDARG00000035095	tdgf1	10: 1955475 ~ 1961930 (-)
ENSDARG00000045447	slc35g2b	24: 3413854 ~ 3419998 (-)
ENSDARG00000045302	smpx	24: 25467465 ~ 25500712 (+)
ENSDARG00000062058	slc12a7b	24: 39778648 ~ 39885785 (-)
ENSDARG00000018881	apobec2a	22: 641342 ~ 651719 (-)
ENSDARG00000023963	tpm4a	22: 15577827 ~ 15602760 (-)
ENSDARG00000024276	pcbp4	22: 32289567 ~ 32507966 (-)
ENSDARG00000112959	NA	22: 26585096 ~ 26595027 (-)
ENSDARG00000079374	tjp1b	25: 32031536 ~ 32271394 (+)
ENSDARG00000096995	fbxl22	25: 26727104 ~ 26736088 (-)
ENSDARG00000038288	cd151	25: 3809733 ~ 3830272 (-)
ENSDARG00000053636	cracr2b	25: 3844582 ~ 3867990 (-)
ENSDARG00000045930	rbpms2a	25: 6122823 ~ 6153077 (+)
--	actc1a.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Cardiac mesoderm.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	PRJNA706197 (18hpf)	Danio rerio	embryo	5	Cardiac mesoderm	baseline	18hpf, FACS sorted sox10:nEOS cells	ENSDARG00000032976 (cmlc1)	marker	DOI:10.1016/j.celrep.2021.110140
	PRJNA706197 (18hpf)	Danio rerio	embryo	5	Cardiac mesoderm	baseline	18hpf, FACS sorted sox10:nEOS cells	ENSDARG00000076126 (actc1a)	marker	DOI:10.1016/j.celrep.2021.110140

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Cardiac mesoderm

Distribution of Cardiac mesoderm in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences