Fish Single-cell RNA Database

GENE ID: ENSDARG00000101706

Symbol	Location	Gene type	Genome version	Species
csrp3	7: 16548219 ~ 16562202 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000101706 (csrp3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045864	lmod2b	4: 4115778 ~ 4119425 (-)
ENSDARG00000101706	csrp3	7: 16548219 ~ 16562202 (-)
ENSDARG00000001431	actn3b	7: 6969909 ~ 7133475 (+)
ENSDARG00000011615	mybpc3	7: 31838320 ~ 31899925 (+)
ENSDARG00000012311	myoz2a	7: 69829442 ~ 69857692 (-)
ENSDARG00000025275	gbgt1l1	5: 23702295 ~ 23715861 (-)
ENSDARG00000011283	si:dkey-110k5.10	5: 23721515 ~ 23729590 (-)
ENSDARG00000091936	NA	5: 23839770 ~ 23843636 (-)
ENSDARG00000007344	tcap	3: 21240594 ~ 21242460 (-)
ENSDARG00000021200	nebl	2: 21076585 ~ 21082695 (-)
ENSDARG00000037266	myoz2b	1: 25917591 ~ 25936679 (-)
ENSDARG00000028213	ttn.2	9: 42894845 ~ 43073960 (-)
ENSDARG00000000563	ttn.1	9: 42732992 ~ 42873700 (-)
ENSDARG00000075733	zyx	16: 17302452 ~ 17347727 (-)
ENSDARG00000057317	nexn	8: 18515711 ~ 18537882 (-)
ENSDARG00000053424	myl2b	8: 4333914 ~ 4359475 (+)
ENSDARG00000014106	cfl2	17: 10007071 ~ 10025234 (-)
ENSDARG00000030490	sptb	17: 38566717 ~ 38599022 (+)
ENSDARG00000071090	actn2b	17: 20122019 ~ 20143946 (-)
ENSDARG00000075263	ankrd1a	17: 23462972 ~ 23472265 (+)
ENSDARG00000097256	si:ch211-270g19.5	17: 15297398 ~ 15305586 (+)
ENSDARG00000002722	ankrd2	13: 40729618 ~ 40741005 (+)
ENSDARG00000056322	ldb3a	13: 22476742 ~ 22552687 (+)
ENSDARG00000076192	ankrd1b	12: 16440708 ~ 16446373 (+)
ENSDARG00000098785	glrx3	12: 42369566 ~ 42397002 (-)
ENSDARG00000028625	jph2	23: 35721607 ~ 35756115 (-)
ENSDARG00000035322	myh7bb	23: 18722715 ~ 18757078 (+)
ENSDARG00000013755	actn3a	21: 27382893 ~ 27404978 (+)
ENSDARG00000030110	myod1	25: 31421253 ~ 31423493 (-)
ENSDARG00000045634	lmod2a	25: 27816115 ~ 27819838 (-)
ENSDARG00000087402	tpm1	25: 33192404 ~ 33250323 (+)
--	zmp:0000000930	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Differentiated art.CMs (cluster: 2)	potential marker	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	Differentiated art.ventricle (cluster: 4)	potential marker	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Cardiac mesoderm (cluster: 5)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Heart primordium (cluster: 30)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Heart primordium (cluster: 10)	potential marker	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Heart primordium (cluster: 7)	potential marker	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Heart primordium (cluster: 5)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Heart primordium (cluster: 4)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Cardiomyocytes (cluster: 1)	potential marker	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000101706

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences