Fish Single-cell RNA Database

CELL TYPE: Dermal skeleton

Distribution of Dermal skeleton in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045580	lum	4: 16349042 ~ 16354292 (-)
ENSDARG00000012066	dcn	4: 16368762 ~ 16412084 (-)
ENSDARG00000079824	ninj2	4: 8168514 ~ 8208654 (+)
ENSDARG00000091234	si:ch73-335l21.4	7: 20239915 ~ 20241413 (-)
ENSDARG00000052057	pcolceb	7: 50849142 ~ 50873496 (+)
ENSDARG00000021442	cdh11	7: 43760149 ~ 43857938 (-)
ENSDARG00000035904	crabp1b	7: 48319916 ~ 48342750 (+)
ENSDARG00000033466	tagln2	5: 37087583 ~ 37095460 (+)
ENSDARG00000089769	hapln1a	5: 46490622 ~ 46505702 (-)
ENSDARG00000009418	mef2cb	5: 48179340 ~ 48307804 (-)
ENSDARG00000003808	aqp3a	5: 43006422 ~ 43011814 (+)
ENSDARG00000060584	kank1b	5: 33222124 ~ 33236637 (-)
ENSDARG00000061017	spns2	5: 30802798 ~ 30924453 (-)
ENSDARG00000043002	vmo1a	3: 5403848 ~ 5413018 (-)
ENSDARG00000058414	bglap	3: 1405504 ~ 1408487 (-)
ENSDARG00000096242	si:ch211-76l23.4	3: 28822065 ~ 28828569 (-)
ENSDARG00000012405	col1a1a	3: 23221047 ~ 23239458 (+)
ENSDARG00000105223	pmp22a	3: 50861176 ~ 50865079 (-)
ENSDARG00000002644	rgs5a	6: 35387367 ~ 35439406 (-)
ENSDARG00000100003	glulb	6: 23809163 ~ 23813893 (+)
ENSDARG00000104495	pltp	6: 55357188 ~ 55393309 (+)
ENSDARG00000070792	lrrc15	6: 36459897 ~ 36463695 (+)
ENSDARG00000019516	sp7	6: 58622831 ~ 58674160 (+)
ENSDARG00000024847	col5a2b	6: 11438972 ~ 11495601 (+)
ENSDARG00000102291	eef1da	2: 50999477 ~ 51032888 (+)
ENSDARG00000040432	klf2b	2: 55665095 ~ 55673225 (+)
ENSDARG00000079183	sod3b	1: 39990547 ~ 39992042 (+)
ENSDARG00000069946	itga6b	1: 31019165 ~ 31064706 (+)
ENSDARG00000000002	ccdc80	9: 34089156 ~ 34113209 (+)
ENSDARG00000035810	rgcc	9: 17438765 ~ 17449872 (+)
ENSDARG00000025348	igfbp5b	9: 46820636 ~ 46842179 (-)
ENSDARG00000002507	itga10	16: 14276364 ~ 14353567 (-)
ENSDARG00000012071	angptl1a	20: 15982482 ~ 16007636 (+)
ENSDARG00000008060	scara3	20: 39283849 ~ 39300730 (+)
ENSDARG00000017884	bgna	8: 14104496 ~ 14126646 (-)
ENSDARG00000060008	hhipl2	17: 45501378 ~ 45525936 (-)
ENSDARG00000054753	col10a1a	17: 15542077 ~ 15546862 (-)
ENSDARG00000089717	qpct	17: 42842632 ~ 42872234 (+)
ENSDARG00000053481	entpd5a	17: 45030407 ~ 45040813 (-)
ENSDARG00000070670	crip2	17: 37445525 ~ 37474689 (-)
ENSDARG00000039964	fgfbp2a	14: 46449070 ~ 46451249 (-)
ENSDARG00000052615	tnmd	14: 40641350 ~ 40722928 (+)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000075121	hbegfa	14: 7048930 ~ 7051940 (+)
ENSDARG00000025089	loxl4	13: 40182487 ~ 40238813 (-)
ENSDARG00000004782	fgfr3	13: 13213567 ~ 13294872 (-)
ENSDARG00000078847	si:dkey-238o13.4	18: 14671789 ~ 14677936 (-)
ENSDARG00000022437	cd81b	18: 27318589 ~ 27336157 (+)
ENSDARG00000060457	pmp22b	12: 37275336 ~ 37299671 (-)
ENSDARG00000035809	col1a1b	12: 3095699 ~ 3133483 (-)
ENSDARG00000020007	col1a2	19: 40983221 ~ 41002980 (+)
ENSDARG00000035677	bmp8a	19: 35019304 ~ 35035857 (-)
ENSDARG00000012422	col11a2	19: 7179740 ~ 7225206 (-)
ENSDARG00000104267	postnb	15: 32710094 ~ 32741733 (+)
ENSDARG00000043446	efhd1	15: 40188076 ~ 40212204 (+)
ENSDARG00000103720	zgc:162730	15: 13984879 ~ 13986761 (+)
ENSDARG00000002945	bgnb	23: 20014030 ~ 20051369 (-)
ENSDARG00000070857	si:dkey-32e6.6	23: 20068880 ~ 20100436 (-)
ENSDARG00000012593	col5a1	21: 6556635 ~ 6725780 (+)
ENSDARG00000069518	aqp3b	21: 16980141 ~ 16988766 (+)
ENSDARG00000056181	ncam1a	21: 23338059 ~ 23746947 (-)
ENSDARG00000069105	fgfr4	21: 37183124 ~ 37194839 (-)
ENSDARG00000070873	ccl25b	11: 6259048 ~ 6265723 (-)
ENSDARG00000043806	postna	10: 25762196 ~ 25817854 (-)
ENSDARG00000044276	spp1	10: 15120711 ~ 15128771 (-)
ENSDARG00000004627	panx3	10: 30997238 ~ 31016806 (-)
ENSDARG00000062363	phex	24: 25404358 ~ 25442346 (-)
ENSDARG00000094422	si:dkey-12l12.1	24: 11334733 ~ 11346871 (+)
ENSDARG00000040133	ackr4b	24: 11381400 ~ 11390669 (+)
ENSDARG00000087804	tnfrsf11a	24: 18485866 ~ 18510631 (-)
ENSDARG00000077138	zgc:195173	24: 33279654 ~ 33285003 (-)
ENSDARG00000105153	ifitm5	25: 7504314 ~ 7506547 (+)
ENSDARG00000104467	bglapl	KN150680.1: 8442 ~ 10291 (+)
--	wisp1b	--
--	sgms2	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Dermal skeleton.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE130526 (fin)	Danio rerio	dorsal and anal fin	2	Dermal skeleton	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	ENSDARG00000021442 (cdh11)	marker	DOI:10.1073/pnas.1901021116
GSE130526 (fin)	Danio rerio	dorsal and anal fin	8	Dermal skeleton	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	ENSDARG00000002507 (itga10)	marker	DOI:10.1073/pnas.1901021116
GSE130526 (fin)	Danio rerio	dorsal and anal fin	8	Dermal skeleton	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	ENSDARG00000017884 (bgna)	marker	DOI:10.1073/pnas.1901021116

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Dermal skeleton

Distribution of Dermal skeleton in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences