Fish Single-cell RNA Database

CELL TYPE: Endoderm

Distribution of Endoderm in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000016691	cd9b	4: 4234994 ~ 4261673 (-)
ENSDARG00000011961	csrp2	4: 2511629 ~ 2525934 (-)
ENSDARG00000004023	isl1	5: 40728613 ~ 40734045 (-)
ENSDARG00000017320	f11r.1	5: 29831195 ~ 29848772 (+)
ENSDARG00000089643	mcama	5: 58850626 ~ 58939460 (-)
ENSDARG00000005104	limk2	5: 20823409 ~ 20863374 (+)
ENSDARG00000113599	hbbe1.1	3: 55114097 ~ 55114874 (+)
ENSDARG00000079305	hbae3	3: 55146418 ~ 55147788 (-)
ENSDARG00000104495	pltp	6: 55357188 ~ 55393309 (+)
ENSDARG00000103589	gata6	2: 4207209 ~ 4217887 (+)
ENSDARG00000014522	cdh6	2: 28049046 ~ 28102264 (-)
ENSDARG00000038694	zgc:101744	2: 37089362 ~ 37103622 (-)
ENSDARG00000001721	oc90	2: 42942552 ~ 42960353 (-)
ENSDARG00000004621	gpm6ab	1: 38649141 ~ 38756904 (-)
ENSDARG00000090190	bcam	16: 24030272 ~ 24135573 (-)
ENSDARG00000052652	fermt1	20: 45775935 ~ 45812152 (-)
ENSDARG00000075307	kcnq2a	8: 25368034 ~ 25422191 (-)
ENSDARG00000092035	si:ch211-156j16.1	8: 26818446 ~ 26838845 (+)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000003411	foxa2	17: 42565998 ~ 42568498 (-)
ENSDARG00000102138	foxa1	17: 10318071 ~ 10320932 (+)
ENSDARG00000087094	foxa	14: 33973146 ~ 33981544 (-)
ENSDARG00000052556	fgfrl1b	14: 41600340 ~ 41678749 (-)
ENSDARG00000005842	cd9a	18: 7122577 ~ 7143920 (-)
ENSDARG00000012788	foxa3	18: 46350574 ~ 46354269 (-)
ENSDARG00000040100	si:dkey-95h12.1	18: 8869465 ~ 8889382 (-)
ENSDARG00000098803	cyp2aa4	23: 42362337 ~ 42372651 (+)
ENSDARG00000063370	sgk2a	23: 4324625 ~ 4344591 (+)
ENSDARG00000022509	cox4i2	23: 18944388 ~ 18951148 (+)
ENSDARG00000055064	prdx5	21: 26657404 ~ 26664825 (+)
ENSDARG00000036456	anxa4	10: 41159241 ~ 41192881 (+)
ENSDARG00000068516	hapln1b	10: 43269918 ~ 43334999 (-)
ENSDARG00000086996	si:ch73-234b20.5	10: 4987766 ~ 4996049 (+)
--	krt18	--
--	si:ch211-5k11.12	--
--	lsp1.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Endoderm.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE106587 (WT)	Danio rerio	embryo	10	Endoderm	baseline	12hpf, 6 somites, wild-type TLAB embryo	ENSDARG00000104495 (pltp)	marker	DOI:10.1126/science.aar3131
	GSE106587 (WT)	Danio rerio	embryo	10	Endoderm	baseline	12hpf, 6 somites, wild-type TLAB embryo	ENSDARG00000003411 (foxa2)	marker	DOI:10.1126/science.aar3131

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Endoderm

Distribution of Endoderm in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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