Fish Single-cell RNA Database

CELL TYPE: Lens

Distribution of Lens in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000096037	si:ch211-214j24.14	4: 5249494 ~ 5253973 (+)
ENSDARG00000045898	si:ch211-152c2.3	4: 842010 ~ 845033 (+)
ENSDARG00000036139	lctla	7: 34227075 ~ 34236091 (+)
ENSDARG00000036140	crybgx	7: 34222433 ~ 34225011 (-)
ENSDARG00000033382	grifin	3: 41784542 ~ 41795917 (-)
ENSDARG00000030349	cryba2a	6: 13780205 ~ 13783634 (-)
ENSDARG00000011998	bfsp2	2: 32761130 ~ 32769759 (-)
ENSDARG00000102129	crygn1	2: 51783120 ~ 51815413 (+)
ENSDARG00000008131	sox1b	1: 46194333 ~ 46196107 (+)
ENSDARG00000053502	cryaa	1: 29096881 ~ 29100923 (+)
ENSDARG00000014803	cryba1l2	1: 44421920 ~ 44434707 (-)
ENSDARG00000016793	crybb1l2	1: 44439661 ~ 44448387 (+)
ENSDARG00000074989	sparcl1	1: 37391141 ~ 37419873 (+)
ENSDARG00000057460	crygm2d13	9: 22091161 ~ 22092089 (-)
ENSDARG00000069827	crygm2d11	9: 22098575 ~ 22099536 (-)
ENSDARG00000069826	crygm2d15	9: 22116600 ~ 22117430 (-)
ENSDARG00000073750	crygm2d18	9: 22120874 ~ 22122637 (-)
ENSDARG00000116164	crygm2d8	9: 22134731 ~ 22135576 (-)
ENSDARG00000087301	crygm2d14	9: 22146301 ~ 22158784 (-)
ENSDARG00000076790	crygm2d16	9: 22157282 ~ 22158325 (-)
ENSDARG00000073874	crygm2d6	9: 22181416 ~ 22182396 (-)
ENSDARG00000109861	crygm2d17	9: 22187031 ~ 22188117 (-)
ENSDARG00000069801	crygm2d12	9: 22204677 ~ 22205682 (-)
ENSDARG00000091148	crygm2d20	9: 22212241 ~ 22213348 (-)
ENSDARG00000069792	crygm2d5	9: 22231878 ~ 22232902 (-)
ENSDARG00000115701	crygm2d9	9: 22239013 ~ 22240052 (-)
ENSDARG00000087164	crygm2d4	9: 22244537 ~ 22245572 (-)
ENSDARG00000076572	crygm2d7	9: 22271056 ~ 22272181 (-)
ENSDARG00000088823	crygm2d3	9: 22280471 ~ 22281854 (-)
ENSDARG00000086658	crygm2d21	9: 22298246 ~ 22299412 (-)
ENSDARG00000087765	crygm2d10	9: 22309838 ~ 22310919 (-)
ENSDARG00000086917	crygm2d2	9: 22317479 ~ 22318511 (-)
ENSDARG00000087324	crygm2d1	9: 22338578 ~ 22339582 (-)
ENSDARG00000041179	crygm5	9: 22345047 ~ 22352280 (-)
ENSDARG00000078134	crygm2f	9: 22344595 ~ 22345500 (-)
ENSDARG00000062147	otc	9: 30268040 ~ 30274412 (-)
ENSDARG00000093318	si:dkey-57a22.15	9: 22003942 ~ 22004833 (+)
ENSDARG00000041925	cryba2b	9: 11554089 ~ 11560432 (-)
ENSDARG00000041295	lim2.5	16: 50166421 ~ 50181206 (-)
ENSDARG00000054150	cx23	20: 37294112 ~ 37298274 (+)
ENSDARG00000094310	si:ch211-255g12.6	8: 6954984 ~ 6958173 (+)
ENSDARG00000041952	prox2	17: 52493499 ~ 52521002 (-)
ENSDARG00000041864	capn3a	17: 45305645 ~ 45346635 (+)
ENSDARG00000007576	crybb1l1	14: 46301973 ~ 46310549 (-)
ENSDARG00000032929	cryba1l1	14: 46313135 ~ 46321016 (+)
ENSDARG00000093764	si:dkey-145c18.5	18: 33725576 ~ 33731615 (+)
ENSDARG00000054584	FO681288.1	18: 48943875 ~ 48953002 (+)
ENSDARG00000003077	gpx9	12: 45676667 ~ 45688953 (+)
ENSDARG00000053323	zgc:112285	12: 35051636 ~ 35070011 (-)
ENSDARG00000053862	crygmx	12: 30838167 ~ 30841679 (-)
ENSDARG00000074001	crygmxl2	12: 30842677 ~ 30846055 (-)
ENSDARG00000017299	fabp11a	19: 32166702 ~ 32169161 (+)
ENSDARG00000015445	lim2.4	19: 10537443 ~ 10554352 (-)
ENSDARG00000041141	cryba1a	15: 28086193 ~ 28107505 (-)
ENSDARG00000007655	crybb1l3	15: 28096152 ~ 28104403 (+)
ENSDARG00000037402	lim2.3	15: 19646902 ~ 19660757 (+)
ENSDARG00000013963	mipb	23: 6637611 ~ 6641223 (-)
ENSDARG00000037285	mipa	23: 27068225 ~ 27072774 (+)
ENSDARG00000091692	havcr2	21: 29112053 ~ 29119560 (-)
ENSDARG00000020122	endou2	21: 41863540 ~ 41873584 (-)
ENSDARG00000053875	cryba1b	21: 39185461 ~ 39195314 (+)
ENSDARG00000007715	lgsn	11: 11263451 ~ 11266882 (-)
ENSDARG00000068974	lim2.1	10: 29896275 ~ 29903165 (-)
ENSDARG00000068507	crybb1	10: 44021147 ~ 44027391 (-)
ENSDARG00000024548	cryba4	10: 44042033 ~ 44051808 (+)
ENSDARG00000030411	crygn2	24: 41305391 ~ 41312459 (-)
ENSDARG00000104801	tubb6	24: 2941000 ~ 2947406 (-)
--	hrasls	--
--	si:ch73-111m19.2	--
--	dnase1l3l	--
--	si:ch211-145g9.7	--
--	crygm2d17.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Lens.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA564810 (5dpf)	Danio rerio	embryo	25	Lens	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000037402 (lim2.3)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	25	Lens	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000102129 (crygn1)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	25	Lens	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000014803 (cryba1l2)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	25	Lens	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000068507 (crybb1)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (2dpf)	Danio rerio	embryo	23	Lens	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000037402 (lim2.3)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (1dpf)	Danio rerio	embryo	29	Lens	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000014803 (cryba1l2)	marker	DOI:10.1093/g3journal/jkac062
GSE158142 (1.5dpf)	Danio rerio	head	17	Lens	baseline	1.5dpf, untreatment	ENSDARG00000041952 (prox2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	17	Lens	baseline	1.5dpf, untreatment	ENSDARG00000041141 (cryba1a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	17	Lens	baseline	1.5dpf, untreatment	ENSDARG00000054150 (cx23)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	19	Lens	baseline	3dpf, untreatment	ENSDARG00000068974 (lim2.1)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Lens

Distribution of Lens in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences