Fish Single-cell RNA Database

CELL TYPE: Midbrain

Distribution of Midbrain in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000025073	rpl18a	4: 391297 ~ 398451 (+)
ENSDARG00000006409	mapk12b	4: 5523690 ~ 5530441 (+)
ENSDARG00000016363	her8a	7: 26429941 ~ 26436480 (-)
ENSDARG00000103316	si:ch211-212k18.5	7: 19552381 ~ 19558842 (+)
ENSDARG00000058369	mex3b	7: 12061787 ~ 12065668 (-)
ENSDARG00000020053	nkd1	7: 37582281 ~ 37622370 (-)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000052695	nr2f1a	5: 49744713 ~ 49751549 (+)
ENSDARG00000025301	gfap	3: 31792441 ~ 31804481 (-)
ENSDARG00000031664	sox21a	6: 7414215 ~ 7415343 (+)
ENSDARG00000053047	eif2s2	6: 49995781 ~ 50011926 (+)
ENSDARG00000100446	si:ch211-286o17.1	6: 47424266 ~ 47462413 (+)
ENSDARG00000009922	dmbx1a	2: 10183640 ~ 10192487 (-)
ENSDARG00000009534	wls	2: 10342177 ~ 10386738 (-)
ENSDARG00000003757	cnpy1	2: 29985664 ~ 29996036 (-)
ENSDARG00000042032	pou3f3a	9: 6658594 ~ 6661666 (-)
ENSDARG00000035810	rgcc	9: 17438765 ~ 17449872 (+)
ENSDARG00000062478	ackr3a	9: 24043780 ~ 24050257 (-)
ENSDARG00000076571	sp5a	9: 3666401 ~ 3671911 (-)
ENSDARG00000030106	stmn4	20: 34773646 ~ 34868814 (-)
ENSDARG00000021959	zgc:101100	8: 20488322 ~ 20491779 (+)
ENSDARG00000068213	fzd10	8: 44295983 ~ 44298964 (-)
ENSDARG00000057322	tmem47	8: 18565904 ~ 18582922 (-)
ENSDARG00000010710	msi1	8: 39607466 ~ 39647216 (+)
ENSDARG00000056627	cxcl14	14: 24400799 ~ 24410673 (-)
ENSDARG00000103732	plp1a	14: 14577246 ~ 14596699 (+)
ENSDARG00000053684	aldob	14: 21106444 ~ 21121199 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000002707	her11	14: 30538482 ~ 30540967 (-)
ENSDARG00000008796	her5	14: 30543008 ~ 30544666 (+)
ENSDARG00000006911	wnt8b	13: 29991090 ~ 30006260 (-)
ENSDARG00000028148	pax2a	13: 29770837 ~ 29805529 (+)
ENSDARG00000105687	CABZ01070258.1	18: 49282063 ~ 49359785 (+)
ENSDARG00000103791	nme2b.1	19: 48117388 ~ 48120285 (+)
ENSDARG00000017673	nova2	15: 28685625 ~ 28766824 (+)
ENSDARG00000007184	zbtb16a	21: 23159385 ~ 23331619 (-)
ENSDARG00000100398	pax7a	11: 41242644 ~ 41372948 (+)
ENSDARG00000075542	zfhx4	24: 23241444 ~ 23323526 (-)
ENSDARG00000061810	mbd3b	22: 20246587 ~ 20309283 (-)
ENSDARG00000051874	stra6	25: 22571475 ~ 22634675 (+)
ENSDARG00000089042	foxb1a	25: 34154171 ~ 34156152 (-)
--	eng2b	--
--	fam212b	--
--	otx1b	--
--	wnt4a	--
--	eng2a	--
--	otx2	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Midbrain.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	-- (eng2a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000008796 (her5)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000002707 (her11)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	-- (eng2b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000062478 (ackr3a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000006911 (wnt8b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000068213 (fzd10)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	2	Midbrain	baseline	12hpf, 6 somites, untreatment	ENSDARG00000076571 (sp5a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	Danio rerio	head	8	Midbrain	baseline	14hpf, 10 somites, untreatment	ENSDARG00000008796 (her5)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (14hpf)	Danio rerio	head	8	Midbrain	baseline	14hpf, 10 somites, untreatment	ENSDARG00000002707 (her11)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	6	Midbrain	baseline	16hpf, 14 somites, untreatment	-- (eng2b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	5	Midbrain	baseline	18hpf, 18 somites, untreatment	-- (eng2b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	5	Midbrain	baseline	18hpf, 18 somites, untreatment	-- (eng2a)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Midbrain

Distribution of Midbrain in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences