Fish Single-cell RNA Database

CELL TYPE: Pharyngeal endoderm

Distribution of Pharyngeal endoderm in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000016691	cd9b	4: 4234994 ~ 4261673 (-)
ENSDARG00000045898	si:ch211-152c2.3	4: 842010 ~ 845033 (+)
ENSDARG00000102750	cdh1	7: 53059299 ~ 53117237 (-)
ENSDARG00000017320	f11r.1	5: 29831195 ~ 29848772 (+)
ENSDARG00000089643	mcama	5: 58850626 ~ 58939460 (-)
ENSDARG00000005104	limk2	5: 20823409 ~ 20863374 (+)
ENSDARG00000104199	si:dkey-43p13.5	3: 43086548 ~ 43092262 (+)
ENSDARG00000079305	hbae3	3: 55146418 ~ 55147788 (-)
ENSDARG00000104495	pltp	6: 55357188 ~ 55393309 (+)
ENSDARG00000041339	zgc:92380	9: 48007081 ~ 48039964 (+)
ENSDARG00000095796	si:dkey-87o1.2	16: 17714664 ~ 17719792 (+)
ENSDARG00000090190	bcam	16: 24030272 ~ 24135573 (-)
ENSDARG00000052652	fermt1	20: 45775935 ~ 45812152 (-)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000003411	foxa2	17: 42565998 ~ 42568498 (-)
ENSDARG00000052556	fgfrl1b	14: 41600340 ~ 41678749 (-)
ENSDARG00000040534	epcam	13: 8840772 ~ 8843363 (+)
ENSDARG00000099672	capgb	12: 22576404 ~ 22607887 (+)
ENSDARG00000071014	s100u	19: 7575141 ~ 7591062 (+)
ENSDARG00000069476	spint2	15: 20239141 ~ 20250516 (+)
ENSDARG00000002601	irx7	23: 37815645 ~ 37816969 (+)
ENSDARG00000063370	sgk2a	23: 4324625 ~ 4344591 (+)
ENSDARG00000058358	krt8	23: 10249626 ~ 10254288 (-)
ENSDARG00000009544	cldnb	21: 25765734 ~ 25766840 (+)
ENSDARG00000014047	cldn7b	10: 22144768 ~ 22150419 (-)
ENSDARG00000026531	alcama	10: 28731749 ~ 28835812 (-)
ENSDARG00000062592	myl10	10: 33171501 ~ 33179988 (+)
ENSDARG00000055100	cxcl12b	22: 26929554 ~ 26945493 (-)
--	krt18	--
--	si:ch211-5k11.12	--
--	lsp1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Pharyngeal endoderm.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (16hpf)	Danio rerio	head	10	Pharyngeal endoderm	baseline	16hpf, 14 somites, untreatment	ENSDARG00000104495 (pltp)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	10	Pharyngeal endoderm	baseline	16hpf, 14 somites, untreatment	ENSDARG00000079305 (hbae3)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (16hpf)	Danio rerio	head	10	Pharyngeal endoderm	baseline	16hpf, 14 somites, untreatment	ENSDARG00000052556 (fgfrl1b)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Pharyngeal endoderm

Distribution of Pharyngeal endoderm in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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