Fish Single-cell RNA Database

CELL TYPE: Rod

Distribution of Rod in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000027424	slc25a3a	4: 16844973 ~ 16853474 (-)
ENSDARG00000010454	guca1a	4: 22343093 ~ 22350976 (+)
ENSDARG00000009466	rgs9bp	7: 41303572 ~ 41312197 (+)
ENSDARG00000086033	tspan5a	7: 69601812 ~ 69636502 (-)
ENSDARG00000035163	tlcd5b	5: 58836354 ~ 58840971 (-)
ENSDARG00000019752	rom1a	5: 67126774 ~ 67145505 (-)
ENSDARG00000039929	ckmt2b	5: 51594209 ~ 51609006 (+)
ENSDARG00000038312	rcl1	5: 1833741 ~ 1869982 (-)
ENSDARG00000054362	ccdc47	3: 31705454 ~ 31716157 (-)
ENSDARG00000075380	kri1	3: 19336286 ~ 19355200 (+)
ENSDARG00000017579	si:ch211-195b15.7	3: 32458720 ~ 32472155 (-)
ENSDARG00000100990	nme3	3: 15990547 ~ 16000168 (-)
ENSDARG00000004459	unc119.2	3: 32594357 ~ 32619634 (+)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000056791	pde6ga	3: 19460991 ~ 19466015 (+)
ENSDARG00000013750	eno1b	6: 40661703 ~ 40669406 (+)
ENSDARG00000104372	gnb1b	6: 53304977 ~ 53334259 (-)
ENSDARG00000090793	si:ch211-207j7.2	6: 8079974 ~ 8093993 (+)
ENSDARG00000078210	tulp1b	6: 54538948 ~ 54562508 (+)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000061515	tmtops2a	6: 15373153 ~ 15447996 (+)
ENSDARG00000029075	pfkfb4b	6: 39993605 ~ 40029423 (-)
ENSDARG00000020814	faimb	6: 16400049 ~ 16406210 (-)
ENSDARG00000021113	ptmaa	6: 29754141 ~ 29795029 (+)
ENSDARG00000036567	aanat1	6: 23616893 ~ 23619428 (-)
ENSDARG00000094889	cplx4c	2: 55890673 ~ 56003799 (-)
ENSDARG00000011886	pdca	2: 20882954 ~ 20890429 (-)
ENSDARG00000012610	saga	2: 5480125 ~ 5505094 (-)
ENSDARG00000017311	gpsm2	2: 45491032 ~ 45510704 (-)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000034007	prom1b	1: 22712931 ~ 22757145 (-)
ENSDARG00000012574	slkb	1: 49606518 ~ 49649122 (-)
ENSDARG00000029898	cnga1a	1: 43894238 ~ 43899422 (-)
ENSDARG00000032056	arl6	1: 34203817 ~ 34233938 (+)
ENSDARG00000036549	agpat3	1: 46837849 ~ 46875493 (-)
ENSDARG00000019566	neurod1	9: 44291721 ~ 44295071 (-)
ENSDARG00000070654	pex5	16: 12064576 ~ 12097558 (-)
ENSDARG00000016528	wdcp	20: 44498056 ~ 44508391 (+)
ENSDARG00000043847	tmem244	20: 2118356 ~ 2134620 (-)
ENSDARG00000024746	hsp90aa1.2	20: 53967350 ~ 53981626 (-)
ENSDARG00000007682	ppdpfa	8: 23213320 ~ 23216035 (+)
ENSDARG00000010710	msi1	8: 39607466 ~ 39647216 (+)
ENSDARG00000008866	cabp4	8: 13794785 ~ 13823098 (-)
ENSDARG00000005776	guk1b	8: 18230948 ~ 18239498 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000090454	gnb1a	8: 53269657 ~ 53334650 (+)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000102288	CABZ01056321.1	17: 47083446 ~ 47090440 (-)
ENSDARG00000104181	tmsb1	14: 12066695 ~ 12071679 (-)
ENSDARG00000098822	tcerg1a	14: 52481288 ~ 52518568 (+)
ENSDARG00000015404	arl3l2	14: 909769 ~ 917065 (+)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000037603	zgc:162144	14: 8619126 ~ 8625845 (-)
ENSDARG00000026926	rom1b	14: 45675306 ~ 45701004 (+)
ENSDARG00000052575	arl13a	14: 41293110 ~ 41308561 (-)
ENSDARG00000041431	slc24a1	18: 19006063 ~ 19039960 (+)
ENSDARG00000059163	rbp3	12: 2665081 ~ 2670156 (+)
ENSDARG00000074396	fscn2b	12: 34438277 ~ 34459601 (-)
ENSDARG00000045156	rgs9b	12: 18681423 ~ 18717659 (+)
ENSDARG00000062902	si:dkey-220f10.4	12: 20618336 ~ 20625630 (+)
ENSDARG00000101984	pde6gb	12: 35980541 ~ 35988586 (-)
ENSDARG00000032849	ndrg1a	19: 34959967 ~ 34979837 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000035918	bzw2	19: 31007901 ~ 31042709 (-)
ENSDARG00000038378	sagb	15: 45640906 ~ 45663081 (+)
ENSDARG00000106745	FO904901.1	15: 12030367 ~ 12054746 (+)
ENSDARG00000013393	guca1b	23: 19227296 ~ 19230627 (-)
ENSDARG00000027495	elovl4b	23: 40410644 ~ 40438581 (+)
ENSDARG00000075295	tulp1a	23: 5465806 ~ 5498539 (+)
ENSDARG00000044169	prelid1b	23: 45512825 ~ 45521759 (+)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000094217	si:dkey-17e16.15	21: 25660613 ~ 25663451 (+)
ENSDARG00000044684	rbp4l	21: 20338613 ~ 20342096 (-)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
ENSDARG00000111106	arl3l1	21: 33172526 ~ 33187913 (+)
ENSDARG00000070666	rhol	11: 19095431 ~ 19097746 (-)
ENSDARG00000015546	alpl	11: 27968834 ~ 28010171 (+)
ENSDARG00000076644	kcnv2a	10: 15310811 ~ 15314151 (+)
ENSDARG00000100139	si:ch211-113d22.2	10: 20448638 ~ 20454008 (-)
ENSDARG00000103006	si:ch1073-303d10.1	10: 375042 ~ 382616 (+)
ENSDARG00000063519	NA	10: 36731039 ~ 36738642 (-)
ENSDARG00000019302	mid1ip1b	22: 11436447 ~ 11438627 (-)
ENSDARG00000022045	map1ab	25: 19356587 ~ 19433244 (-)
ENSDARG00000017446	camk1db	25: 7987920 ~ 8030425 (-)
ENSDARG00000070734	dyrk4	25: 16783584 ~ 16849005 (-)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Rod.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000070666 (rhol)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000002193 (rho)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000044199 (gnat1)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000038378 (sagb)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000012125 (cnga1b)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000029898 (cnga1a)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000013393 (guca1b)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (nrl-KO)	Danio rerio	retina	5	Rod	growth	5mpf, three retinas from nrl-KO zebrafsih	ENSDARG00000010454 (guca1a)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000070666 (rhol)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000002193 (rho)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000044199 (gnat1)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000038378 (sagb)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000012125 (cnga1b)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	2	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000029898 (cnga1a)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	3	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000044199 (gnat1)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	Danio rerio	retina	3	Rod	baseline	5mpf, three retinas from WT zebrafsih	ENSDARG00000002193 (rho)	marker	DOI:10.1371/journal.pgen.1009841

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Rod

Distribution of Rod in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences