Fish Single-cell RNA Database

GENE ID: ENSDARG00000008866

Symbol	Location	Gene type	Genome version	Species
cabp4	8: 13794785 ~ 13823098 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000008866 (cabp4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000026855	cacna2d4a	4: 20271463 ~ 20292853 (-)
ENSDARG00000029524	impdh1b	4: 18960914 ~ 18985481 (+)
ENSDARG00000011259	trpm1a	7: 29312376 ~ 29341364 (-)
ENSDARG00000098206	ptrh1	5: 65086668 ~ 65092987 (+)
ENSDARG00000100559	tor2a	5: 65112481 ~ 65121747 (-)
ENSDARG00000023759	zgc:73226	5: 6350328 ~ 6377865 (-)
ENSDARG00000104069	rnf170	5: 337215 ~ 343477 (+)
ENSDARG00000059020	thap1	5: 431994 ~ 441090 (+)
ENSDARG00000058154	znf385c	3: 17744339 ~ 17860047 (+)
ENSDARG00000093431	iqcb1	6: 9245087 ~ 9251122 (-)
ENSDARG00000079665	gpr158b	2: 12104389 ~ 12243213 (-)
ENSDARG00000005544	btbd3a	1: 51191049 ~ 51197601 (+)
ENSDARG00000058803	grk1a	1: 245076 ~ 258138 (+)
ENSDARG00000061791	nyx	9: 33357011 ~ 33361199 (+)
ENSDARG00000076569	ndp	9: 33734850 ~ 33749556 (-)
ENSDARG00000031600	rd3	20: 13969414 ~ 13997835 (+)
ENSDARG00000088377	rp1l1b	20: 19119800 ~ 19148677 (+)
ENSDARG00000077187	impg1a	20: 778608 ~ 805245 (-)
ENSDARG00000042873	slc25a27	20: 36801804 ~ 36809059 (-)
ENSDARG00000021789	myoc	20: 15015557 ~ 15021628 (+)
ENSDARG00000010933	cacna1fa	8: 44850710 ~ 44868020 (-)
ENSDARG00000017742	grm6a	8: 8532407 ~ 8624008 (+)
ENSDARG00000008866	cabp4	8: 13794785 ~ 13823098 (-)
ENSDARG00000023683	cacna1fb	8: 22851472 ~ 22927224 (+)
ENSDARG00000074839	impg1b	17: 36627099 ~ 36681740 (+)
ENSDARG00000055463	lrit3a	14: 36328425 ~ 36345175 (-)
ENSDARG00000057054	lrit3b	13: 12591508 ~ 12602920 (-)
ENSDARG00000041431	slc24a1	18: 19006063 ~ 19039960 (+)
ENSDARG00000075067	aipl1	15: 24873388 ~ 24884784 (-)
ENSDARG00000076153	lca5	23: 31380607 ~ 31400792 (-)
ENSDARG00000102891	ppp1r26	21: 7100442 ~ 7112924 (+)
ENSDARG00000102310	si:ch211-156l18.8	11: 12052791 ~ 12092178 (+)
ENSDARG00000045904	nr2e3	25: 22274642 ~ 22278655 (+)
ENSDARG00000023886	cacna2d4b	25: 19023737 ~ 19090628 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Photoreceptor cells (cluster: 16)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Rod opsin (cluster: 11) Rod opsin (cluster: 2) Rod opsin (cluster: 9)	potential marker potential marker potential marker	NA NA NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Rod (cluster: 5)	potential marker	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Rod (cluster: 2)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000008866

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences