Fish Single-cell RNA Database

GENE ID: ENSDARG00000012125

Symbol	Location	Gene type	Genome version	Species
cnga1b	23: 43849190 ~ 43866354 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000012125 (cnga1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000063158	NA	7: 73332486 ~ 73402030 (+)
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000018329	gc2	7: 51267478 ~ 51300277 (-)
ENSDARG00000013252	tmc5	3: 26734162 ~ 26751819 (+)
ENSDARG00000044767	tspan10	3: 15176737 ~ 15186292 (+)
ENSDARG00000078210	tulp1b	6: 54538948 ~ 54562508 (+)
ENSDARG00000044194	tcta	6: 43015916 ~ 43019222 (+)
ENSDARG00000052433	inha	6: 21068783 ~ 21091948 (-)
ENSDARG00000029898	cnga1a	1: 43894238 ~ 43899422 (-)
ENSDARG00000089742	fam161a	1: 53686995 ~ 53700392 (-)
ENSDARG00000060264	si:dkey-37g12.1	1: 41886830 ~ 41924484 (+)
ENSDARG00000011066	glra3	1: 38416106 ~ 38538284 (-)
ENSDARG00000068280	NA	9: 50316921 ~ 50340720 (+)
ENSDARG00000074638	loxhd1b	8: 714875 ~ 810556 (-)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000012019	glra1	14: 25816874 ~ 25911567 (+)
ENSDARG00000031427	calm2a	13: 8777633 ~ 8785610 (-)
ENSDARG00000019179	lrit1a	13: 29462249 ~ 29467558 (+)
ENSDARG00000068242	cngb1a	18: 45483282 ~ 45519748 (+)
ENSDARG00000038018	prph2a	12: 34896956 ~ 34901874 (+)
ENSDARG00000025504	gucy2f	15: 29362714 ~ 29381134 (+)
ENSDARG00000007655	crybb1l3	15: 28096152 ~ 28104403 (+)
ENSDARG00000070127	nfxl1	23: 43870886 ~ 43929041 (+)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
ENSDARG00000086362	pou6f2	24: 10039165 ~ 10272212 (+)
ENSDARG00000042107	cngb1b	25: 17508235 ~ 17552299 (-)
ENSDARG00000059347	calml4b	25: 1266945 ~ 1323928 (-)
ENSDARG00000078331	best1	25: 3069671 ~ 3087556 (-)
--	pde6g	--
--	pde6h	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Rod (cluster: 5)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Rod (cluster: 2)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Pineal gland (cluster: 23)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Photoreceptor cells (cluster: 16)	potential marker	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Rod opsin (cluster: 11) Rod opsin (cluster: 2) Rod opsin (cluster: 9)	potential marker potential marker potential marker	NA NA NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000012125

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences