Fish Single-cell RNA Database

GENE ID: ENSDARG00000068242

Symbol	Location	Gene type	Genome version	Species
cngb1a	18: 45483282 ~ 45519748 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068242 (cngb1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000018329	gc2	7: 51267478 ~ 51300277 (-)
ENSDARG00000028048	rdh8a	3: 53687645 ~ 53722182 (-)
ENSDARG00000044199	gnat1	6: 42918933 ~ 42930302 (+)
ENSDARG00000070726	cnga3a	6: 38791900 ~ 38818582 (-)
ENSDARG00000012297	cnga3b	1: 10771457 ~ 10776547 (+)
ENSDARG00000029898	cnga1a	1: 43894238 ~ 43899422 (-)
ENSDARG00000060264	si:dkey-37g12.1	1: 41886830 ~ 41924484 (+)
ENSDARG00000069383	cnga4	9: 32930622 ~ 32946439 (+)
ENSDARG00000017437	adcy3b	20: 46651916 ~ 46693942 (+)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000058302	sh3bgrl	14: 9405099 ~ 9420911 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000093267	cngk	13: 7477500 ~ 7524090 (+)
ENSDARG00000031427	calm2a	13: 8777633 ~ 8785610 (-)
ENSDARG00000095067	NA	13: 33141279 ~ 33153889 (-)
ENSDARG00000068242	cngb1a	18: 45483282 ~ 45519748 (+)
ENSDARG00000056045	si:ch73-139e5.4	12: 19065679 ~ 19091214 (-)
ENSDARG00000076776	gucy2g	12: 31460877 ~ 31476114 (+)
ENSDARG00000063690	nrm	19: 816208 ~ 822275 (+)
ENSDARG00000031751	npr1a	19: 26423590 ~ 26629117 (+)
ENSDARG00000025504	gucy2f	15: 29362714 ~ 29381134 (+)
ENSDARG00000007655	crybb1l3	15: 28096152 ~ 28104403 (+)
ENSDARG00000030758	guca1c	15: 2884711 ~ 2903475 (-)
ENSDARG00000012125	cnga1b	23: 43849190 ~ 43866354 (+)
ENSDARG00000011671	pde6b	21: 20356458 ~ 20376607 (+)
ENSDARG00000059347	calml4b	25: 1266945 ~ 1323928 (-)
--	pde6g	--
--	cnga5	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Rod opsin (cluster: 11) Rod opsin (cluster: 2) Rod opsin (cluster: 9)	potential marker potential marker potential marker	NA NA NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000068242

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences