DATASET ID: PRJNA706197 (18hpf)

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 18hpf, FACS sorted sox10:nEOS cells
Source dataset ID SRR13839979
Project ID PRJNA706197
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neural crest ENSDARG00000030402 (twist1a) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    2 Epithelial cells ENSDARG00000040534 (epcam) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    3 Endothelium ENSDARG00000000767 (spi1b) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    4 Neural crest ENSDARG00000008861 (tfap2e) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    5 Cardiac mesoderm ENSDARG00000032976 (cmlc1) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    5 Cardiac mesoderm ENSDARG00000076126 (actc1a) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    6 Endothelium ENSDARG00000105215 (kdrl) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    7 Epithelial cells ENSDARG00000017624 (krt4) protein_coding marker DOI:10.1016/j.celrep.2021.110140
    8 Fibroblasts ENSDARG00000036869 (tcf21) protein_coding marker DOI:10.1016/j.celrep.2021.110140

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)