DATASET ID: GSE158142 (14hpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 14hpf, 10 somites, untreatment
Source dataset ID GSM4793187
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Mid,hind progenitors (neural plate) ENSDARG00000056729 (her4.2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000071684 (rx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000040321 (rx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Optic stalk (ventral diencephalon) ENSDARG00000008131 (sox1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Optic stalk (ventral diencephalon) ENSDARG00000070677 (fezf2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Epidermal cells ENSDARG00000012972 (cfl1l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Epidermal cells ENSDARG00000033466 (tagln2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Epidermal cells ENSDARG00000063295 (myh9a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Epidermal cells ENSDARG00000052652 (fermt1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000012060 (thbs3b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000033971 (prrx1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Mesoderm ENSDARG00000091481 (foxc1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Midbrain ENSDARG00000008796 (her5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Midbrain ENSDARG00000002707 (her11) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Epidermal cells ENSDARG00000012972 (cfl1l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Epidermal cells ENSDARG00000033466 (tagln2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Epidermal cells ENSDARG00000052652 (fermt1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Neural crest -- (fam212aa) -- marker DOI:10.1016/j.neuron.2020.09.023
    10 Neural crest ENSDARG00000076010 (twist1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Neural crest ENSDARG00000043923 (sox9b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Neuron ENSDARG00000004232 (dlb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Neuron ENSDARG00000003469 (neurod4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Neuron ENSDARG00000074030 (myt1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Neuron ENSDARG00000086327 (srrm4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Somite (mesoderm) ENSDARG00000017917 (her7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Somite (mesoderm) ENSDARG00000056030 (hoxb7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Somite (mesoderm) ENSDARG00000056995 (snai1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Floor plate ENSDARG00000054942 (lgals2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Floor plate ENSDARG00000021462 (daw1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Placode -- (he1b) -- marker DOI:10.1016/j.neuron.2020.09.023
    14 Placode -- (ctslb.1) -- marker DOI:10.1016/j.neuron.2020.09.023
    14 Placode ENSDARG00000036194 (pitx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Placode ENSDARG00000039757 (mcfd2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)