DATASET ID: GSE158142 (20hpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 20hpf, 21-22 somites, untreatment
Source dataset ID GSM4793193
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Progenitors ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Progenitors ENSDARG00000024488 (top2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Progenitors ENSDARG00000100741 (cdc20) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Epidermal cells ENSDARG00000052652 (fermt1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000071684 (rx1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000005574 (vsx2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Optic vesicle ENSDARG00000029179 (foxd1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Neural crest ENSDARG00000062262 (ednrab) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000014420 (elavl3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000074030 (myt1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000102879 (myt1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Epidermal cells ENSDARG00000056938 (kera) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Epidermal cells ENSDARG00000004539 (ptgs2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Epidermal cells -- (tnw) -- marker DOI:10.1016/j.neuron.2020.09.023
    9 Pectoral fin ENSDARG00000038288 (cd151) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Pectoral fin ENSDARG00000056913 (pcolcea) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Floor plate ENSDARG00000038867 (shhb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Floor plate ENSDARG00000031483 (col9a1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Floor plate ENSDARG00000101919 (foxj1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Periderm cells ENSDARG00000057437 (apodb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Periderm cells ENSDARG00000029290 (stx11b.1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Periderm cells ENSDARG00000074749 (abca12) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Periderm cells ENSDARG00000056239 (tmem45b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000039579 (cfd) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000045887 (mmp30) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Epidermal cells ENSDARG00000102178 (emilin2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000053868 (etv2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000075549 (cdh5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000004378 (yrk) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000077304 (erg) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neural crest ENSDARG00000003732 (mitfa) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neural crest ENSDARG00000045601 (cax1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Neural crest ENSDARG00000053269 (slc2a15b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)