DATASET ID: GSE158142 (24hpf)

Basic information

Tissue / Organ head
Experiment type baseline
Sample 24hpf, untreatment
Source dataset ID GSM4793196
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Progenitors ENSDARG00000053569 (sox3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neural crest ENSDARG00000033971 (prrx1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Neural crest ENSDARG00000105223 (pmp22a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Epidermal cells ENSDARG00000012972 (cfl1l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000102879 (myt1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000071026 (mllt11) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000104945 (sncb) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000007982 (onecut1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000009553 (gng3) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron ENSDARG00000056175 (scrt2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Neuron -- (hmp19) -- marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000003808 (aqp3a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000076321 (col28a2a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000088711 (lgals1l1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000116617 (spaca4l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000056938 (kera) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Epidermal cells ENSDARG00000021720 (col7a1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Periderm cells ENSDARG00000043128 (cldne) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Periderm cells ENSDARG00000101043 (ppl) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    8 Periderm cells ENSDARG00000012341 (capn9) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000019566 (neurod1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Neuron ENSDARG00000007788 (atp2b1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Epidermal cells ENSDARG00000045887 (mmp30) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000056087 (ecrg4a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000102178 (emilin2b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000088514 (and1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000079302 (and2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin -- (ogn) -- marker DOI:10.1016/j.neuron.2020.09.023
    11 Pectoral fin ENSDARG00000103515 (vcana) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000057575 (pnp4a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000042214 (tmem243a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000020143 (pah) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000071475 (aox5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000053269 (slc2a15b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000003732 (mitfa) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000045601 (cax1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Pigment cell (neural crest derived) ENSDARG00000077082 (agtrap) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000004378 (yrk) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) -- (vsg1) -- marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000036616 (gpr182) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000075549 (cdh5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Rostral blood island (myeloid) ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Optic vesicle ENSDARG00000040306 (otomp) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Optic vesicle ENSDARG00000056247 (bricd5) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    14 Optic vesicle ENSDARG00000001870 (atp1a1a.4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)