DATASET ID: GSE158142 (5dpf)

Basic information

Tissue / Organ brain, eye
Experiment type baseline
Sample 5dpf, untreatment
Source dataset ID GSM4793216
Project ID GSE158142
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Neuron ENSDARG00000006497 (rtn1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    2 Neuron ENSDARG00000045639 (elavl4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000004169 (stmn1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    3 Progenitors ENSDARG00000011094 (ccna2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Chondrocytes ENSDARG00000105223 (pmp22a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Chondrocytes ENSDARG00000019949 (serpinh1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Chondrocytes ENSDARG00000059367 (mfap2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    4 Chondrocytes ENSDARG00000017676 (mmp2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    5 Retina ENSDARG00000032705 (foxg1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Dorsal habenula ENSDARG00000042970 (gng8) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    6 Dorsal habenula ENSDARG00000104254 (cpne4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000019856 (atp1a1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    7 Glia ENSDARG00000053262 (atp1b4) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Cranial ganglion ENSDARG00000078417 (plxdc1) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    9 Cranial ganglion ENSDARG00000004930 (lmo7a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Retina ENSDARG00000027495 (elovl4b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Retina ENSDARG00000070107 (six7) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Retina ENSDARG00000075295 (tulp1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Retina ENSDARG00000052575 (arl13a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    10 Retina ENSDARG00000102430 (opn6a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Erythroid cells ENSDARG00000038643 (alas2) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Erythroid cells ENSDARG00000057206 (nmt1b) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    11 Erythroid cells -- (hbae1) -- marker DOI:10.1016/j.neuron.2020.09.023
    12 Glia ENSDARG00000061697 (ca14) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    12 Glia ENSDARG00000012504 (rlbp1a) protein_coding marker DOI:10.1016/j.neuron.2020.09.023
    13 Eye ENSDARG00000012972 (cfl1l) protein_coding marker DOI:10.1016/j.neuron.2020.09.023

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)