DATASET ID: GSE175929 (5mpf)

Basic information

Tissue / Organ retina
Experiment type baseline
Sample 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
Source dataset ID GSM5351368
Project ID GSE175929
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Blue cone opsin ENSDARG00000017274 (opn1sw2) protein_coding marker DOI:10.1038/s41598-021-96837-z
    2 Rod opsin ENSDARG00000002193 (rho) protein_coding marker DOI:10.1038/s41598-021-96837-z
    3 Blue cone opsin ENSDARG00000017274 (opn1sw2) protein_coding marker DOI:10.1038/s41598-021-96837-z
    4 Rod opsin ENSDARG00000021113 (ptmaa) protein_coding marker DOI:10.1038/s41598-021-96837-z
    5 Bipolar cells ENSDARG00000002576 (cabp5a) protein_coding marker DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z
    5 Bipolar cells ENSDARG00000056292 (vsx1) protein_coding marker DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z
    5 Bipolar cells ENSDARG00000036058 (gnao1b) protein_coding marker DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z
    5 Bipolar cells ENSDARG00000004358 (gnb3a) protein_coding marker DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z
    7 Red cones ENSDARG00000044861 (opn1lw2) protein_coding marker DOI:10.1038/s41598-021-96837-z
    8 Green cone opsin ENSDARG00000097008 (opn1mw1) protein_coding marker DOI:10.1038/s41598-021-96837-z
    8 Green cone opsin ENSDARG00000044280 (opn1mw2) protein_coding marker DOI:10.1038/s41598-021-96837-z
    9 Rod opsin ENSDARG00000002193 (rho) protein_coding marker DOI:10.1038/s41598-021-96837-z
    11 Rod opsin ENSDARG00000002193 (rho) protein_coding marker DOI:10.1038/s41598-021-96837-z
    13 Bipolar cells ENSDARG00000004023 (isl1) protein_coding marker DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)