Fish Single-cell RNA Database

GENE ID: ENSDARG00000004358

Symbol	Location	Gene type	Genome version	Species
gnb3a	16: 12022543 ~ 12049762 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000004358 (gnb3a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045677	opn1sw1	4: 13577665 ~ 13580348 (-)
ENSDARG00000021647	gnai1	4: 22680442 ~ 22714063 (+)
ENSDARG00000104685	grk1b	5: 54161362 ~ 54197084 (-)
ENSDARG00000060012	f2r	5: 46196147 ~ 46198034 (+)
ENSDARG00000025826	gna12a	3: 41647637 ~ 41706238 (+)
ENSDARG00000010680	gngt2a	3: 23092762 ~ 23096141 (+)
ENSDARG00000037921	gng13b	3: 35589212 ~ 35602233 (-)
ENSDARG00000043094	gnas	6: 49811831 ~ 49873020 (-)
ENSDARG00000003375	gng12a	2: 10287133 ~ 10338813 (-)
ENSDARG00000039830	gng5	2: 6243144 ~ 6249163 (+)
ENSDARG00000038693	gng7	2: 36990024 ~ 37043905 (-)
ENSDARG00000020602	grk7a	2: 16536453 ~ 16544343 (+)
ENSDARG00000028276	si:ch211-196h16.12	1: 55002583 ~ 55007223 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000009480	pdcl	16: 51950510 ~ 51966846 (-)
ENSDARG00000077145	adcy3a	16: 2515223 ~ 2558653 (-)
ENSDARG00000069026	adcy1a	20: 6894886 ~ 7000225 (-)
ENSDARG00000070110	opn5	20: 35998073 ~ 36036696 (+)
ENSDARG00000042529	gnat2	8: 25225590 ~ 25247284 (-)
ENSDARG00000002172	aplnra	8: 40325690 ~ 40327397 (-)
ENSDARG00000079399	NA	14: 36869273 ~ 36878988 (+)
ENSDARG00000056831	gng2	13: 12045475 ~ 12088835 (+)
ENSDARG00000039435	rgs17	13: 23728176 ~ 23756700 (-)
ENSDARG00000016676	gnao1a	18: 22793465 ~ 22975655 (+)
ENSDARG00000103543	gngt2b	12: 3249054 ~ 3252263 (-)
ENSDARG00000035798	gngt1	19: 40856534 ~ 40859468 (+)
ENSDARG00000037527	si:rp71-17i16.5	23: 20357247 ~ 20363261 (-)
ENSDARG00000009553	gng3	21: 26697536 ~ 26707052 (+)
ENSDARG00000042970	gng8	21: 25231160 ~ 25235926 (+)
ENSDARG00000079472	NA	21: 5846969 ~ 5856050 (-)
ENSDARG00000044862	opn1lw1	11: 25477643 ~ 25480037 (+)
ENSDARG00000044861	opn1lw2	11: 25481046 ~ 25483206 (+)
ENSDARG00000016364	gna15.1	22: 22021936 ~ 22036307 (+)
ENSDARG00000100869	adcy9	22: 26600834 ~ 26697254 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Bipolar cells (cluster: 5)	marker	DOI:10.1186/1749-8104-4-14, DOI:10.1016/j.cell.2016.07.054, DOI:10.1038/s41598-021-96837-z
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Bipolar cells (cluster: 2)	marker	DOI:10.1371/journal.pgen.1009841
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Pineal gland (cluster: 23)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Neuron (cluster: 7)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Neuron (cluster: 10)	potential marker	NA
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment	Bipolar cells (cluster: 1) Bipolar cells (cluster: 1)	potential marker potential marker	NA NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000004358

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences