Fish Single-cell RNA Database

GENE ID: ENSDARG00000104685

Symbol	Location	Gene type	Genome version	Species
grk1b	5: 54161362 ~ 54197084 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000104685 (grk1b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000011545	arrb2b	7: 25920792 ~ 26005691 (+)
ENSDARG00000055229	ncs1a	5: 32402026 ~ 32445835 (-)
ENSDARG00000104685	grk1b	5: 54161362 ~ 54197084 (-)
ENSDARG00000052223	rcvrna	3: 50441444 ~ 50443607 (-)
ENSDARG00000097008	opn1mw1	6: 41181869 ~ 41183823 (+)
ENSDARG00000044280	opn1mw2	6: 41186320 ~ 41189460 (+)
ENSDARG00000044279	opn1mw3	6: 41191482 ~ 41193419 (+)
ENSDARG00000000638	opn1mw4	6: 41200500 ~ 41202554 (+)
ENSDARG00000052088	cxcr1	9: 48085039 ~ 48091741 (+)
ENSDARG00000041959	cxcr4b	9: 10692905 ~ 10694930 (+)
ENSDARG00000076546	trhra	16: 38818864 ~ 38826777 (+)
ENSDARG00000079829	ccr2	16: 8668519 ~ 8670413 (+)
ENSDARG00000105363	ccr2	16: 8673636 ~ 8681178 (+)
ENSDARG00000004358	gnb3a	16: 12022543 ~ 12049762 (+)
ENSDARG00000019902	rcvrn2	16: 13911692 ~ 13921589 (-)
ENSDARG00000090464	taar14h	20: 46250944 ~ 46252080 (+)
ENSDARG00000034229	kcnip3a	8: 42764234 ~ 42907824 (+)
ENSDARG00000054186	ncs1b	8: 32516160 ~ 32599858 (+)
ENSDARG00000002193	rho	8: 54076195 ~ 54077740 (-)
ENSDARG00000000380	pde6a	14: 25005403 ~ 25035010 (-)
ENSDARG00000009637	rcvrn3	19: 10339538 ~ 10352579 (+)
ENSDARG00000036159	trhrb	19: 22727940 ~ 22731812 (+)
ENSDARG00000078068	abcg4b	15: 23487730 ~ 23508214 (-)
ENSDARG00000039489	git1	15: 28431621 ~ 28480576 (-)
ENSDARG00000030758	guca1c	15: 2884711 ~ 2903475 (-)
ENSDARG00000013393	guca1b	23: 19227296 ~ 19230627 (-)
ENSDARG00000044629	guca1d	21: 22906479 ~ 22910530 (-)
ENSDARG00000070666	rhol	11: 19095431 ~ 19097746 (-)
ENSDARG00000039215	arrb2a	10: 22890791 ~ 22907418 (+)
ENSDARG00000101567	guca1e	22: 1092479 ~ 1109547 (+)
ENSDARG00000045737	guca1g	25: 14092871 ~ 14096311 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Pineal gland (cluster: 23)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment	Retina (cluster: 10)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Neuron (cluster: 11)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Retina (cluster: 11)	potential marker	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	Photoreceptor cells (cluster: 8)	potential marker	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Cone (cluster: 3)	potential marker	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Cone (cluster: 4)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000104685

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences