DATASET ID: GSE106587 (WT)

Basic information

Tissue / Organ embryo
Experiment type baseline
Sample 12hpf, 6 somites, wild-type TLAB embryo
Source dataset ID GSM3084402
Project ID GSE106587
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    3 Somites ENSDARG00000017917 (her7) protein_coding marker DOI:10.1126/science.aar3131
    4 Epidermal cells ENSDARG00000054616 (cldni) protein_coding marker DOI:10.1126/science.aar3131
    5 Optic cup ENSDARG00000052893 (rx3) protein_coding marker DOI:10.1126/science.aar3131
    5 Optic cup ENSDARG00000040321 (rx2) protein_coding marker DOI:10.1126/science.aar3131
    6 Heart primordium ENSDARG00000017821 (gata5) protein_coding marker DOI:10.1126/science.aar3131
    6 Heart primordium ENSDARG00000008305 (hand2) protein_coding marker DOI:10.1126/science.aar3131
    9 Mesoderm ENSDARG00000056913 (pcolcea) protein_coding marker DOI:10.1126/science.aar3131
    9 Mesoderm ENSDARG00000033971 (prrx1a) protein_coding marker DOI:10.1126/science.aar3131
    9 Mesoderm ENSDARG00000017195 (foxf2a) protein_coding marker DOI:10.1126/science.aar3131
    10 Endoderm ENSDARG00000104495 (pltp) protein_coding marker DOI:10.1126/science.aar3131
    10 Endoderm ENSDARG00000003411 (foxa2) protein_coding marker DOI:10.1126/science.aar3131
    12 Neural crest ENSDARG00000021032 (foxd3) protein_coding marker DOI:10.1126/science.aar3131
    12 Neural crest ENSDARG00000043923 (sox9b) protein_coding marker DOI:10.1126/science.aar3131
    12 Neural crest ENSDARG00000077467 (sox10) protein_coding marker DOI:10.1126/science.aar3131
    13 Neural crest ENSDARG00000021032 (foxd3) protein_coding marker DOI:10.1126/science.aar3131
    13 Neural crest ENSDARG00000043923 (sox9b) protein_coding marker DOI:10.1126/science.aar3131
    13 Neural crest ENSDARG00000077467 (sox10) protein_coding marker DOI:10.1126/science.aar3131
    14 Adaxial cells ENSDARG00000009438 (myog) protein_coding marker DOI:10.1126/science.aar3131
    15 Placode ENSDARG00000062892 (foxe3) protein_coding marker DOI:10.1126/science.aar3131
    16 Optic cup ENSDARG00000052893 (rx3) protein_coding marker DOI:10.1126/science.aar3131
    17 Floor plate ENSDARG00000068567 (shha) protein_coding marker DOI:10.1126/science.aar3131
    18 Hematopoietic cells ENSDARG00000013477 (gata1a) protein_coding marker DOI:10.1126/science.aar3131
    18 Hematopoietic cells ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1126/science.aar3131

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)