DATASET ID: GSE161712 (M. marinum)

Basic information

Tissue / Organ granulomas
Experiment type disease
Sample adult, infected with bacteria of M. marinum
Source dataset ID GSM4913139
Project ID GSE161712
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Epithelialized macrophages ENSDARG00000016771 (tfa) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    2 Epithelialized macrophages ENSDARG00000017624 (krt4) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    3 Epithelialized macrophages ENSDARG00000028618 (krt18b) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    5 Proliferating cells ENSDARG00000024488 (top2a) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    7 Proliferating cells ENSDARG00000054155 (pcna) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    8 Neutrophils ENSDARG00000019521 (mpx) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    9 Monocytes ENSDARG00000088641 (grn2) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    9 Monocytes ENSDARG00000089362 (grn1) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    10 Inflammatory macrophages ENSDARG00000031976 (nos2b) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    10 Inflammatory macrophages ENSDARG00000059294 (marco) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    12 Epithelialized macrophages ENSDARG00000002445 (prdm1a) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    13 T cells ENSDARG00000015752 (zap70) protein_coding marker DOI:10.1016/j.cell.2021.02.046
    15 Red blood cells -- (hbba1.1) -- marker DOI:10.1016/j.cell.2021.02.046
    16 Eosinophils ENSDARG00000100051 (spink2.4) protein_coding marker DOI:10.1016/j.cell.2021.02.046

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)