DATASET ID: GSE126647 (Pbx4-depleted)

Basic information

Tissue / Organ embryo
Experiment type growth
Sample 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
Source dataset ID GSM3610371
Project ID GSE126647
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    3 More-differentiated SHFPs ENSDARG00000058179 (ackr3b) protein_coding marker DOI:10.1242/dev.185652
    4 Differentiated art.ventricle ENSDARG00000103515 (vcana) protein_coding marker DOI:10.1242/dev.185652
    5 Less-differentiated SHFPs ENSDARG00000037116 (cxcl12a) protein_coding marker DOI:10.1242/dev.185652
    6 Endothelium ENSDARG00000103533 (clec14a) protein_coding marker DOI:10.1242/dev.185652
    9 Proliferative SHFPs ENSDARG00000103754 (aspm) protein_coding marker DOI:10.1242/dev.185652
    10 SHFP ENSDARG00000104181 (tmsb1) protein_coding marker DOI:10.1242/dev.185652
    11 Skeletal muscle cells ENSDARG00000035958 (tnni2b.1) protein_coding marker DOI:10.1242/dev.185652
    13 SHFP ENSDARG00000102178 (emilin2b) protein_coding marker DOI:10.1242/dev.185652

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)