|
Dataset ID |
Tissue / Organ |
Experiment type |
Sample |
Cell type |
Marker class |
Evidence |
|
GSE144944 (fgfr3 -|-) |
cranial vault |
growth |
1mpf, fgfr3 -/- |
Periderm cells (cluster: 16)
|
potential marker
|
NA
|
|
GSE144944 (fgfr3 +|+) |
cranial vault |
baseline |
1mpf, fgfr3 +/+ |
Periderm cells (cluster: 16)
|
potential marker
|
NA
|
|
PRJNA551501 (8mpf) |
thyroid gland |
baseline |
8mpf, Tg(tg:mVenus-T2A-NTR) |
Gills (cluster: 8)
|
potential marker
|
NA
|
|
GSE130526 (fin) |
dorsal and anal fin |
baseline |
adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
|
|
|
|
GSE173972 (KO, ezh1-|-) |
embryo |
hematopoietic |
1.25dpf, Kdrl-positive embryos |
|
|
|
|
PRJNA734348 (shield, dnmt1) |
embryo |
growth |
6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
|
|
|
|
GSE168695 (5dpf) |
embryo |
baseline |
5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
|
|
|
|
PRJNA640816 (2.9dpf) |
embryo |
baseline |
2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
|
|
|
|
PRJNA564810 (5dpf) |
embryo |
baseline |
5dpf, a single-cell transcriptome atlas for zebrafish development |
|
|
|
|
GSE161712 (M. marinum) |
granulomas |
disease |
adult, infected with bacteria of M. marinum |
|
|
|
|
GSE123241 (wild type) |
neuromast |
baseline |
5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
|
|
|
|
PRJNA605021 (supporting cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
|
|
|
|
PRJNA605021 (hair cells) |
neuromast |
baseline |
7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
|
|
|
|
PRJNA668529 (3d) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 days |
|
|
|
|
PRJNA668529 (3h) |
olfactory rosette |
disease |
3mpf, intranasal 100ng r-Spike 3 hours |
|
|
|
|
PRJNA668529 (control) |
olfactory rosette |
baseline |
3mpf, intranasal PBS |
|
|
|
|
GSE122680 (14dpf) |
retina |
baseline |
14dpf, WT, untreatment |
|
|
|
|
PRJNA551501 (2mpf) |
thyroid gland |
baseline |
2mpf, Tg(tg:mVenus-T2A-NTR) |
|
|
|
|
GSE131136 (all) |
trunk, skin |
baseline |
5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
|
|
|
|
GSE159709 (melanoma) |
tumor |
disease |
adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells |
|
|
|
|
PRJNA641144 (P_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vivo primary tumors |
|
|
|
|
PRJNA641144 (M_INV) |
tumor |
disease |
adult, ZMEL1-INV cells in vivo metastases |
|
|
|
|
PRJNA641144 (M_PRO) |
tumor |
disease |
adult, ZMEL1-PRO cells in vivo metastases |
|
|
|
|
GSE158099 (WT) |
whole body |
baseline |
16dpf, cd41:GFPlow-WT |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|
|
GSE158099 (runx1 -|-) |
whole body |
hematopoietic |
16dpf, cd41:GFPlow-runx1-/- |
|
|
|