Fish Single-cell RNA Database

GENE ID: ENSDARG00000054741

Symbol	Location	Gene type	Genome version	Species
prkg2	5: 39679767 ~ 39702345 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000054741 (prkg2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000074602	mrvi1	7: 66739166 ~ 66807135 (+)
ENSDARG00000033614	rasgef1ba	5: 39706345 ~ 39805874 (-)
ENSDARG00000011239	ppp1r14aa	5: 36730726 ~ 36739509 (+)
ENSDARG00000054741	prkg2	5: 39679767 ~ 39702345 (-)
ENSDARG00000074231	CU138547.1	3: 13332870 ~ 13347096 (+)
ENSDARG00000014320	gucy2c	3: 3765831 ~ 3798755 (-)
ENSDARG00000013787	gucy1a1	1: 25783801 ~ 25799051 (+)
ENSDARG00000086790	gucy1b1	1: 25801648 ~ 25841659 (+)
ENSDARG00000000002	ccdc80	9: 34089156 ~ 34113209 (+)
ENSDARG00000012848	arih2	8: 26034623 ~ 26057401 (+)
ENSDARG00000068123	gkap1	8: 49706387 ~ 49728754 (-)
ENSDARG00000097256	si:ch211-270g19.5	17: 15297398 ~ 15305586 (+)
ENSDARG00000074688	fbrs	12: 27034594 ~ 27061336 (+)
ENSDARG00000056045	si:ch73-139e5.4	12: 19065679 ~ 19091214 (-)
ENSDARG00000093185	NA	15: 44366556 ~ 44404098 (+)
ENSDARG00000016095	htr6	23: 39730965 ~ 39738055 (-)
ENSDARG00000056591	gucy1b2	11: 29739348 ~ 29755142 (+)
ENSDARG00000044251	rasgef1bb	10: 9159279 ~ 9184667 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Bipolar cells (cluster: 13)	potential marker	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000054741

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences