Fish Single-cell RNA Database

GENE ID: ENSDARG00000096234

Symbol	Location	Gene type	Genome version	Species
tac4	3: 34623560 ~ 34624745 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000096234 (tac4), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000052063	col4a5	7: 51103232 ~ 51194430 (+)
ENSDARG00000052110	mboat4	5: 66157117 ~ 66160415 (-)
ENSDARG00000101886	pdxdc1	3: 36616713 ~ 36644776 (+)
ENSDARG00000018002	eci1	3: 27770110 ~ 27777671 (+)
ENSDARG00000096234	tac4	3: 34623560 ~ 34624745 (-)
ENSDARG00000023858	ccdc174	6: 40429773 ~ 40435025 (-)
ENSDARG00000070618	tatdn2	6: 40439858 ~ 40449399 (-)
ENSDARG00000056230	ghsra	2: 25551457 ~ 25553632 (-)
ENSDARG00000055009	col4a1	9: 8634229 ~ 8670158 (-)
ENSDARG00000068916	ppp1r35	20: 54512067 ~ 54522660 (-)
ENSDARG00000086789	bahd1	17: 31276437 ~ 31344400 (-)
ENSDARG00000003395	col4a3	15: 36054864 ~ 36112794 (+)
ENSDARG00000091207	mlnr	15: 2976120 ~ 2985599 (-)
ENSDARG00000092799	camta2	23: 44655942 ~ 44701374 (+)
ENSDARG00000057117	ghsrb	24: 26742226 ~ 26746179 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas duct epithelial cells (cluster: 7)	potential marker	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000096234

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences