Fish Single-cell RNA Database

GENE ID: ENSDARG00000039240

Symbol	Location	Gene type	Genome version	Species
cacng5b	3: 56366395 ~ 56394018 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000039240 (cacng5b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000002816	rasgrf2b	5: 51443009 ~ 51581775 (+)
ENSDARG00000060631	NA	5: 33356425 ~ 33460959 (-)
ENSDARG00000070522	cacna1ia	3: 29082267 ~ 29378430 (+)
ENSDARG00000039240	cacng5b	3: 56366395 ~ 56394018 (+)
ENSDARG00000052360	cacng1b	3: 61043774 ~ 61065055 (-)
ENSDARG00000008772	cacng1a	6: 21470261 ~ 21492752 (-)
ENSDARG00000099708	cacna1hb	1: 8304904 ~ 8404005 (+)
ENSDARG00000096214	si:ch211-197k17.3	1: 54758575 ~ 54765262 (-)
ENSDARG00000056797	ppp2r2ca	1: 14283692 ~ 14306838 (+)
ENSDARG00000010933	cacna1fa	8: 44850710 ~ 44868020 (-)
ENSDARG00000062277	ppp2r2cb	14: 21204541 ~ 21219659 (-)
ENSDARG00000073824	NA	18: 26337869 ~ 26418637 (+)
ENSDARG00000062328	rasgrp2	21: 28415888 ~ 28439596 (-)
ENSDARG00000099221	ppp2r2bb	21: 41649336 ~ 41777754 (+)
ENSDARG00000075054	rasgrf2a	10: 3049636 ~ 3106762 (+)
--	ppp2r2ba	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000039240

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences