Fish Single-cell RNA Database

GENE ID: ENSDARG00000059574

Symbol	Location	Gene type	Genome version	Species
fscn2a	3: 57234093 ~ 57257075 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000059574 (fscn2a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000029692	rufy3	5: 42912966 ~ 42933814 (+)
ENSDARG00000059574	fscn2a	3: 57234093 ~ 57257075 (+)
ENSDARG00000077410	myo9b	2: 37684922 ~ 37744951 (-)
ENSDARG00000060148	sh3pxd2aa	1: 47585700 ~ 47686888 (+)
ENSDARG00000006892	myo3b	9: 3699397 ~ 3866707 (-)
ENSDARG00000089320	ccdc175	17: 14425219 ~ 14442570 (+)
ENSDARG00000026926	rom1b	14: 45675306 ~ 45701004 (+)
ENSDARG00000055291	rab18a	12: 22921477 ~ 22933524 (+)
ENSDARG00000004372	fmnl3	23: 25354856 ~ 25448872 (+)
ENSDARG00000021351	nefma	21: 19013850 ~ 19018455 (-)
ENSDARG00000010186	myo3a	24: 6161037 ~ 6260333 (-)
ENSDARG00000078313	NA	22: 5331675 ~ 5428243 (+)
ENSDARG00000062103	ankrd24	22: 21359164 ~ 21392748 (-)
--	eps8	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	Green cone opsin (cluster: 8)	potential marker	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000059574

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences