Fish Single-cell RNA Database

GENE ID: ENSDARG00000001771

Symbol	Location	Gene type	Genome version	Species
otol1a	2: 6303639 ~ 6316167 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000001771 (otol1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000096762	si:dkey-61p9.11	4: 77590387 ~ 77602685 (-)
ENSDARG00000068460	otog	7: 39463050 ~ 39537292 (-)
ENSDARG00000056047	noxa1	5: 29142797 ~ 29152464 (-)
ENSDARG00000059558	tecta	5: 63177355 ~ 63233216 (-)
ENSDARG00000041294	noxo1a	3: 62161184 ~ 62169060 (+)
ENSDARG00000001771	otol1a	2: 6303639 ~ 6316167 (+)
ENSDARG00000001721	oc90	2: 42942552 ~ 42960353 (-)
ENSDARG00000040306	otomp	2: 41504752 ~ 41518340 (-)
ENSDARG00000074989	sparcl1	1: 37391141 ~ 37419873 (+)
ENSDARG00000030832	otofa	20: 31076488 ~ 31212556 (+)
ENSDARG00000021566	NA	14: 49602 ~ 58161 (+)
ENSDARG00000007180	slc30a4	18: 5510251 ~ 5541784 (+)
ENSDARG00000088750	otogl	18: 6155258 ~ 6265533 (+)
ENSDARG00000018283	cyba	18: 31073265 ~ 31075619 (+)
ENSDARG00000045268	tectb	12: 31476169 ~ 31484677 (-)
ENSDARG00000058880	cldnj	15: 2631421 ~ 2632891 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	NA	NA	NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000001771

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences