Fish Single-cell RNA Database

GENE ID: ENSDARG00000006560

Symbol	Location	Gene type	Genome version	Species
irf4a	2: 854444 ~ 879800 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000006560 (irf4a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000095132	si:ch211-227e10.6	4: 45033922 ~ 45098326 (-)
ENSDARG00000000767	spi1b	7: 32644673 ~ 32659353 (-)
ENSDARG00000056587	cyp2r1	7: 27455321 ~ 27697234 (+)
ENSDARG00000100420	tpcn2	7: 55005229 ~ 55051692 (-)
ENSDARG00000029204	tyrp1a	7: 74084203 ~ 74090168 (-)
ENSDARG00000070864	bcl6aa	6: 28216487 ~ 28222592 (-)
ENSDARG00000054250	crbn	6: 40456798 ~ 40466861 (-)
ENSDARG00000077858	asip1	6: 49975910 ~ 49983329 (-)
ENSDARG00000079972	nfatc2b	6: 55221490 ~ 55254786 (-)
ENSDARG00000061303	oca2	6: 37894220 ~ 38054851 (+)
ENSDARG00000006560	irf4a	2: 854444 ~ 879800 (-)
ENSDARG00000039850	dusp22b	2: 881954 ~ 898899 (-)
ENSDARG00000069295	bcl6ab	2: 10087334 ~ 10098191 (-)
ENSDARG00000007387	irf2a	1: 39859782 ~ 39880189 (+)
ENSDARG00000094344	si:dkey-222h21.8	1: 58260886 ~ 58268231 (+)
ENSDARG00000095719	si:dkey-222h21.2	1: 58353661 ~ 58357992 (+)
ENSDARG00000002445	prdm1a	16: 7430998 ~ 7443388 (-)
ENSDARG00000055610	exoc2	20: 26572456 ~ 26624042 (-)
ENSDARG00000011818	batf	20: 46572550 ~ 46646556 (+)
ENSDARG00000042577	batf3	20: 37812699 ~ 37813863 (-)
ENSDARG00000091859	si:ch73-233m11.2	8: 7055619 ~ 7078575 (-)
ENSDARG00000013539	ikzf1	13: 15957508 ~ 15994472 (-)
ENSDARG00000024771	slc24a5	18: 5213338 ~ 5227420 (+)
ENSDARG00000056396	dusp22a	18: 30511230 ~ 30564688 (+)
ENSDARG00000036168	nfatc1	19: 22216778 ~ 22304534 (+)
ENSDARG00000078912	si:ch73-24k9.2	19: 2670130 ~ 2683769 (+)
ENSDARG00000104676	prkd2	15: 11825366 ~ 11875820 (+)
ENSDARG00000078101	nlrc9	15: 41448242 ~ 41523292 (-)
ENSDARG00000078191	zbtb46	23: 13721826 ~ 13806495 (+)
ENSDARG00000015902	stat6	23: 27078866 ~ 27123180 (-)
ENSDARG00000100927	nfatc2a	23: 39089574 ~ 39164866 (+)
ENSDARG00000069196	ebf1b	21: 33724979 ~ 33995710 (-)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000078147	il10	11: 21137948 ~ 21139503 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000006560

EXPRESSION

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