Fish Single-cell RNA Database

GENE ID: ENSDARG00000090724

Symbol	Location	Gene type	Genome version	Species
scn12aa	2: 51888033 ~ 52020049 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000090724 (scn12aa), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000059950	plxdc2	7: 41517173 ~ 41627956 (-)
ENSDARG00000060319	scn4bb	5: 37918810 ~ 37935621 (-)
ENSDARG00000062174	cacnb4b	6: 14086688 ~ 14146979 (-)
ENSDARG00000002241	kcna2a	6: 49412754 ~ 49414235 (+)
ENSDARG00000090724	scn12aa	2: 51888033 ~ 52020049 (-)
ENSDARG00000077219	si:ch211-106h4.6	2: 31614533 ~ 31626209 (+)
ENSDARG00000009738	cacnb4a	9: 38074082 ~ 38130085 (+)
ENSDARG00000060222	scn1ba	16: 41873708 ~ 41897745 (+)
ENSDARG00000070170	si:ch211-225p5.8	16: 41974438 ~ 41984133 (+)
ENSDARG00000105003	scn1bb	19: 206835 ~ 212478 (+)
ENSDARG00000062359	scn3b	15: 22133839 ~ 22147860 (-)
ENSDARG00000090126	si:ch211-105f12.2	15: 15375607 ~ 15381879 (+)
ENSDARG00000099031	scn4ba	15: 12466852 ~ 12500938 (-)
ENSDARG00000101713	scn2b	15: 12521379 ~ 12545683 (-)
ENSDARG00000001881	cacnb3a	23: 14097508 ~ 14180307 (+)
ENSDARG00000078011	NA	23: 5977965 ~ 6067036 (+)
ENSDARG00000099325	gig2i	21: 22672794 ~ 22673758 (-)
ENSDARG00000018065	ntm	10: 29963518 ~ 30589172 (+)
ENSDARG00000102312	scn5lab	24: 40905100 ~ 41143256 (+)
ENSDARG00000021378	phf21ab	25: 7718967 ~ 7764083 (-)
--	kcna3a	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000090724

EXPRESSION

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