Fish Single-cell RNA Database

GENE ID: ENSDARG00000091059

Symbol	Location	Gene type	Genome version	Species
onecut3b	2: 57504073 ~ 57563888 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000091059 (onecut3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000003200	foxm1	4: 5807964 ~ 5831522 (-)
ENSDARG00000011449	fes	7: 14211322 ~ 14266466 (+)
ENSDARG00000012196	fer	5: 57243568 ~ 57311037 (-)
ENSDARG00000054683	prdm8b	5: 39504136 ~ 39508958 (+)
ENSDARG00000034240	capza1a	6: 48322250 ~ 48347724 (-)
ENSDARG00000091059	onecut3b	2: 57504073 ~ 57563888 (+)
ENSDARG00000062338	zeb2a	9: 25568839 ~ 25837749 (+)
ENSDARG00000006206	pou4f3	9: 54290896 ~ 54292162 (+)
ENSDARG00000017107	nr2e1	20: 32437396 ~ 32446406 (-)
ENSDARG00000056090	capza1b	8: 27807266 ~ 27827660 (+)
ENSDARG00000102433	sytl4	14: 35424539 ~ 35441425 (+)
ENSDARG00000039750	ldlrap1b	13: 45582391 ~ 45645167 (+)
ENSDARG00000004311	ldlrap1a	19: 29337789 ~ 29363779 (+)
ENSDARG00000017602	ccng2	21: 5800306 ~ 5809022 (+)
ENSDARG00000044375	zgc:158291	21: 38312549 ~ 38315241 (+)
ENSDARG00000020191	ppef1	11: 30253968 ~ 30280958 (+)
--	wdr7	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	NA	NA	NA
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000091059

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences