Fish Single-cell RNA Database

GENE ID: ENSDARG00000026771

Symbol	Location	Gene type	Genome version	Species
tmem41ab	1: 30422143 ~ 30438036 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000026771 (tmem41ab), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036136	tipin	7: 34236238 ~ 34245115 (+)
ENSDARG00000052462	pisd	5: 57489253 ~ 57528943 (-)
ENSDARG00000073837	senp2	6: 11397269 ~ 11415635 (+)
ENSDARG00000026771	tmem41ab	1: 30422143 ~ 30438036 (+)
ENSDARG00000093997	si:dkey-9i23.15	1: 44925422 ~ 44928987 (-)
ENSDARG00000009493	NA	9: 52694971 ~ 52814314 (-)
ENSDARG00000058351	tapbpl	16: 9787383 ~ 9802998 (-)
ENSDARG00000101569	ppargc1b	14: 24934736 ~ 25001584 (+)
ENSDARG00000070472	arf5	18: 7543347 ~ 7553756 (+)
ENSDARG00000071414	cybc1	12: 33452915 ~ 33459579 (-)
ENSDARG00000061723	tmem64	19: 31532043 ~ 31553518 (+)
ENSDARG00000069314	tmem199	15: 24673283 ~ 24676315 (-)
ENSDARG00000007108	lipia	21: 34945033 ~ 34972872 (-)
ENSDARG00000014506	tmem126a	10: 29269998 ~ 29272757 (-)
ENSDARG00000077304	erg	10: 161660 ~ 167782 (-)
ENSDARG00000005332	lipib	24: 24086249 ~ 24101132 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000026771

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences