Fish Single-cell RNA Database

GENE ID: ENSDARG00000037144

Symbol	Location	Gene type	Genome version	Species
cpb2	1: 29759678 ~ 29764060 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000037144 (cpb2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045516	itih2	4: 25187912 ~ 25215968 (-)
ENSDARG00000018149	slc38a4	4: 1516716 ~ 1566572 (+)
ENSDARG00000036041	f2	7: 38750871 ~ 38760158 (+)
ENSDARG00000021004	c5	5: 63458263 ~ 63509581 (-)
ENSDARG00000089310	gc	5: 45677781 ~ 45725008 (+)
ENSDARG00000044365	angptl3	6: 32344197 ~ 32349153 (-)
ENSDARG00000038258	proca	2: 5456541 ~ 5475910 (-)
ENSDARG00000093079	proca	2: 5457388 ~ 5475921 (-)
ENSDARG00000056196	slc2a2	2: 25816843 ~ 25837986 (+)
ENSDARG00000069293	ahsg2	2: 10134345 ~ 10141741 (+)
ENSDARG00000039517	c8b	2: 1478225 ~ 1518360 (-)
ENSDARG00000039516	c8a	2: 1486822 ~ 1499584 (+)
ENSDARG00000055874	cpe	1: 20839482 ~ 20911297 (-)
ENSDARG00000031632	chst10	1: 28031697 ~ 28047242 (+)
ENSDARG00000034862	f7	1: 119960 ~ 125246 (+)
ENSDARG00000076900	prozb	1: 144284 ~ 151998 (+)
ENSDARG00000020741	fga	1: 10063501 ~ 10071539 (-)
ENSDARG00000095590	spp2	1: 29743442 ~ 29747702 (-)
ENSDARG00000037144	cpb2	1: 29759678 ~ 29764060 (+)
ENSDARG00000037281	fgg	1: 25669799 ~ 25679383 (-)
ENSDARG00000032708	arl4cb	9: 23356774 ~ 23358597 (-)
ENSDARG00000016532	suco	20: 14683699 ~ 14781904 (-)
ENSDARG00000023111	plg	20: 42688488 ~ 42702884 (-)
ENSDARG00000092470	thbd	20: 51464670 ~ 51466071 (+)
ENSDARG00000056765	ela2l	8: 21366771 ~ 21372485 (-)
ENSDARG00000056744	ela2	8: 21376290 ~ 21381734 (+)
ENSDARG00000010097	f9a	14: 32430982 ~ 32438200 (+)
ENSDARG00000016412	agt	13: 23988442 ~ 23995876 (+)
ENSDARG00000096728	cpn1	12: 31608908 ~ 31631132 (+)
ENSDARG00000057498	habp2	12: 31713239 ~ 31720066 (+)
ENSDARG00000002968	a1cf	12: 6160446 ~ 6177894 (-)
ENSDARG00000036776	aldh8a1	23: 31752604 ~ 31763753 (-)
ENSDARG00000029493	f9b	10: 26747755 ~ 26757486 (+)
ENSDARG00000058005	hgd	24: 23959107 ~ 23975132 (+)
ENSDARG00000042684	serpinc1	22: 16022211 ~ 16028191 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000037144

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences