Fish Single-cell RNA Database

GENE ID: ENSDARG00000084546

Symbol	Location	Gene type	Genome version	Species
BX248082.1	16: 16154324 ~ 16154458 (+)	rRNA	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

	Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
	GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	Hypertrophic chondrocyte (cluster: 7)	potential marker	NA
	GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Immune cells (cluster: 4) Osteoblast (cluster: 7)	potential marker potential marker	NA NA
	GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 12) Immune cells (cluster: 4)	potential marker potential marker	NA NA
	GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Inflammatory macrophages (cluster: 10) T cells (cluster: 13)	potential marker potential marker	NA NA
	GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	Immune cells (cluster: 4)	potential marker	NA
	GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Immune cells (cluster: 2)	potential marker	NA
	GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Smooth muscle cells (cluster: 11) Smooth muscle cells (cluster: 12) Macrophages (cluster: 42)	potential marker potential marker potential marker	NA NA NA
	GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	NA	NA	NA
	GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
	GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
	GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
	GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	NA	NA	NA
	GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
	GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
	GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.