Fish Single-cell RNA Database

GENE ID: ENSDARG00000093521

Symbol	Location	Gene type	Genome version	Species
b3gnt3.3	8: 13597405 ~ 13600274 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000093521 (b3gnt3.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035198	gcnt4a	5: 51026563 ~ 51030105 (+)
ENSDARG00000037879	lfng	3: 41917499 ~ 41926869 (+)
ENSDARG00000040608	gcnt7	6: 56097971 ~ 56111829 (-)
ENSDARG00000077352	b4galnt1b	6: 39222598 ~ 39252851 (+)
ENSDARG00000043431	b3gntl1	1: 57347888 ~ 57365052 (+)
ENSDARG00000012667	tfap2b	20: 47686629 ~ 47704973 (-)
ENSDARG00000093521	b3gnt3.3	8: 13597405 ~ 13600274 (-)
ENSDARG00000091902	b3gnt2b	17: 24036791 ~ 24082364 (+)
ENSDARG00000068219	b3gnt2l	18: 44703343 ~ 44709050 (+)
ENSDARG00000019746	rfng	12: 3054442 ~ 3077395 (-)
ENSDARG00000012745	poc1bl	19: 34169055 ~ 34218156 (+)
ENSDARG00000055490	galnt12	19: 34230108 ~ 34259666 (+)
ENSDARG00000061520	b4galnt1a	23: 28097282 ~ 28123767 (-)
ENSDARG00000044514	st6gal1	21: 31150438 ~ 31184035 (+)
ENSDARG00000044755	NA	21: 15833222 ~ 15841167 (+)
ENSDARG00000077550	gcnt4b	21: 15865523 ~ 15869484 (+)
ENSDARG00000100322	fut10	10: 7255695 ~ 7264766 (+)
ENSDARG00000038489	b3gnt7	22: 36656680 ~ 36661461 (+)
ENSDARG00000058556	muc5.2	25: 8407892 ~ 8445400 (+)
ENSDARG00000060471	gcnt3	25: 34274691 ~ 34284144 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000093521

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences