Fish Single-cell RNA Database

GENE ID: ENSDARG00000104730

Symbol	Location	Gene type	Genome version	Species
si:dkey-33b17.3	8: 36142734 ~ 36146191 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000104730 (si:dkey-33b17.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000093687	si:dkey-193c22.1	5: 40200818 ~ 40210447 (-)
ENSDARG00000094764	fyba	5: 8616667 ~ 8636168 (-)
ENSDARG00000020084	tg	16: 31530762 ~ 31598771 (-)
ENSDARG00000075932	si:ch73-211l2.3	8: 44475793 ~ 44480456 (+)
ENSDARG00000074816	si:zfos-367g9.1	8: 36354125 ~ 36362830 (+)
ENSDARG00000070206	si:zfos-2070c2.1	8: 36377006 ~ 36387387 (-)
ENSDARG00000031745	mhc2a	8: 36472444 ~ 36475328 (-)
ENSDARG00000103716	si:busm1-194e12.11	8: 36283548 ~ 36287046 (-)
ENSDARG00000104730	si:dkey-33b17.3	8: 36142734 ~ 36146191 (+)
ENSDARG00000055875	pag1	19: 32048379 ~ 32150214 (-)
ENSDARG00000044694	fybb	21: 19844195 ~ 19866351 (+)
ENSDARG00000044718	vav2	21: 18021087 ~ 18262287 (-)
--	zgc:103599	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 13)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Gills (cluster: 8)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000104730

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences