Fish Single-cell RNA Database

GENE ID: ENSDARG00000088484

Symbol	Location	Gene type	Genome version	Species
kcnj1a.6	18: 48491007 ~ 48500545 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000088484 (kcnj1a.6), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000039392	wnk1b	4: 8045564 ~ 8155571 (-)
ENSDARG00000015985	abcc9	4: 14660769 ~ 14713773 (+)
ENSDARG00000088967	wnk4b	3: 22432069 ~ 22551356 (+)
ENSDARG00000030530	slc22a2	20: 42668875 ~ 42688487 (+)
ENSDARG00000088484	kcnj1a.6	18: 48491007 ~ 48500545 (-)
ENSDARG00000077007	abcc8b	18: 50040849 ~ 50083408 (-)
ENSDARG00000098096	slc12a1	18: 5273953 ~ 5300028 (+)
ENSDARG00000058212	ndnl2	23: 12897878 ~ 12913131 (-)
ENSDARG00000021611	si:dkey-151g10.3	23: 25172682 ~ 25222673 (+)
ENSDARG00000051879	abcc8	25: 22719852 ~ 22849186 (+)
ENSDARG00000078992	wnk1a	25: 21114671 ~ 21156678 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	KS ionocytes (cluster: 15)	marker	DOI:10.1016/j.devcel.2021.03.027
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Integument Ionocyte (cluster: 27)	potential marker	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000088484

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences