Fish Single-cell RNA Database

GENE ID: ENSDARG00000079076

Symbol	Location	Gene type	Genome version	Species
hgfb	18: 9996813 ~ 10062630 (+)	protein_coding	GRCz11	Danio rerio

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Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000079076 (hgfb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000094799	plxnb2a	4: 14481835 ~ 14624481 (-)
ENSDARG00000090618	malrd1	7: 41632928 ~ 41693004 (-)
ENSDARG00000101717	sox17	7: 58772209 ~ 58776400 (-)
ENSDARG00000098511	ntrk2b	5: 55626693 ~ 55689656 (+)
ENSDARG00000042525	ebf2	5: 67390115 ~ 67441054 (+)
ENSDARG00000060235	mst1ra	6: 42475730 ~ 42505007 (+)
ENSDARG00000017211	plxnb1b	6: 21874932 ~ 21988375 (-)
ENSDARG00000011600	epha4b	2: 40294313 ~ 40514151 (+)
ENSDARG00000040982	fgf14	9: 31838044 ~ 31915423 (-)
ENSDARG00000089123	negaly6	16: 24698849 ~ 24703855 (-)
ENSDARG00000079107	clec11a	20: 3934516 ~ 3940286 (+)
ENSDARG00000027423	igf1ra	18: 20881462 ~ 21047580 (-)
ENSDARG00000079076	hgfb	18: 9996813 ~ 10062630 (+)
ENSDARG00000091116	pkhd1l1	19: 22850657 ~ 22919764 (+)
ENSDARG00000075821	plxnb1a	23: 9938236 ~ 10137322 (-)
ENSDARG00000086337	si:dkey-102g19.3	21: 4702773 ~ 4707754 (+)
ENSDARG00000104775	ly6m2	21: 5472330 ~ 5481824 (+)
ENSDARG00000099416	ly6m3	21: 5494561 ~ 5498520 (+)
ENSDARG00000099332	ly6m5	21: 5518619 ~ 5521294 (+)
ENSDARG00000102159	ly6m6	21: 5531138 ~ 5542714 (+)
ENSDARG00000101786	si:ch211-134a4.6	21: 5560040 ~ 5569012 (+)
ENSDARG00000103060	ly6m7	21: 5580948 ~ 5587025 (+)
ENSDARG00000044655	st14b	21: 25275693 ~ 25295087 (-)
ENSDARG00000004871	mst1rb	11: 35196587 ~ 35238756 (+)
ENSDARG00000078647	samsn1b	10: 38417512 ~ 38428094 (+)
ENSDARG00000043907	fgf11b	10: 22161585 ~ 22249444 (-)
ENSDARG00000026531	alcama	10: 28731749 ~ 28835812 (-)
ENSDARG00000070903	met	25: 18583877 ~ 18679071 (+)
ENSDARG00000031768	roraa	25: 33849647 ~ 33969717 (+)
ENSDARG00000099564	atoh1b	KN150642.1: 9441 ~ 10244 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Fibroblasts (cluster: 8)	potential marker	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	NA	NA	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	NA	NA	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	NA	NA	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	NA	NA	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture	NA	NA	NA
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture	NA	NA	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000079076

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MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences