Fish Single-cell RNA Database

GENE ID: ENSDARG00000089806

Symbol	Location	Gene type	Genome version	Species
si:dkey-239j18.3	12: 16634442 ~ 16636627 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000089806 (si:dkey-239j18.3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	Placode (cluster: 15)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Hatching gland (cluster: 25) Hatching gland (cluster: 6)	potential marker potential marker	NA NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Prechordal plate,polsterq (cluster: 14)	potential marker	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	Placode (cluster: 14)	potential marker	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	Prechordal plate,polster (cluster: 15)	potential marker	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment

After clicking the magnifying glass button, the clustering and expression information will be displayed below.