Fish Single-cell RNA Database

GENE ID: ENSDARG00000074156

Symbol	Location	Gene type	Genome version	Species
sgca	12: 3078221 ~ 3093024 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074156 (sgca), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000007370	dysf	7: 25558275 ~ 25697285 (-)
ENSDARG00000007344	tcap	3: 21240594 ~ 21242460 (-)
ENSDARG00000024141	cav3	6: 41996066 ~ 42003780 (-)
ENSDARG00000056178	dpt	6: 29184137 ~ 29195642 (-)
ENSDARG00000061249	myom1a	2: 30916188 ~ 30959913 (+)
ENSDARG00000077130	bcl10	2: 1945211 ~ 1954204 (+)
ENSDARG00000008487	dmd	1: 10824351 ~ 11075405 (-)
ENSDARG00000041729	sntb1	16: 15164983 ~ 15263099 (-)
ENSDARG00000052341	sgcb	20: 23173710 ~ 23181762 (+)
ENSDARG00000073866	tdp1	17: 16348830 ~ 16422654 (-)
ENSDARG00000041864	capn3a	17: 45305645 ~ 45346635 (+)
ENSDARG00000076312	myot	14: 12222543 ~ 12307522 (-)
ENSDARG00000033462	pimr111	14: 33391851 ~ 33396934 (-)
ENSDARG00000041747	sspn	18: 16111185 ~ 16123222 (-)
ENSDARG00000099730	pkma	18: 907266 ~ 951570 (+)
ENSDARG00000063457	wash1	18: 6479963 ~ 6499252 (+)
ENSDARG00000054301	kti12	18: 26770967 ~ 26781692 (-)
ENSDARG00000074156	sgca	12: 3078221 ~ 3093024 (+)
ENSDARG00000009341	nrap	12: 30586599 ~ 30618440 (+)
ENSDARG00000038107	sgcg	15: 9327252 ~ 9353696 (+)
ENSDARG00000100222	utrn	23: 1181248 ~ 1444835 (+)
ENSDARG00000098573	sgcd	21: 35652184 ~ 35853245 (-)
ENSDARG00000016153	dag1	22: 33131891 ~ 33194802 (+)
ENSDARG00000015731	ano5a	25: 35189555 ~ 35244242 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000074156

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences