Fish Single-cell RNA Database

GENE ID: ENSDARG00000074564

Symbol	Location	Gene type	Genome version	Species
tlcd3bb	12: 3740605 ~ 3756405 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000074564 (tlcd3bb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000069171	gramd4a	4: 28062473 ~ 28161198 (-)
ENSDARG00000069030	skor1a	7: 33954099 ~ 33961551 (-)
ENSDARG00000010108	bri3bp	5: 18904968 ~ 18911114 (-)
ENSDARG00000015905	lztr1	5: 12724046 ~ 12743212 (-)
ENSDARG00000037865	cln3	3: 39579393 ~ 39599339 (+)
ENSDARG00000055510	ypel3	3: 26186153 ~ 26191960 (-)
ENSDARG00000053383	rprma	9: 4609746 ~ 4610777 (+)
ENSDARG00000078762	tmem169b	9: 52608045 ~ 52609336 (-)
ENSDARG00000022939	ino80e	16: 10413551 ~ 10422490 (+)
ENSDARG00000037070	tmem242	20: 4885298 ~ 4896355 (+)
ENSDARG00000040452	fam214a	18: 38774584 ~ 38857612 (+)
ENSDARG00000074750	qser1	18: 45676788 ~ 45698627 (+)
ENSDARG00000076966	pagr1	12: 3723650 ~ 3732014 (+)
ENSDARG00000074564	tlcd3bb	12: 3740605 ~ 3756405 (-)
ENSDARG00000078800	slc26a10	23: 28077953 ~ 28091109 (+)
ENSDARG00000062471	tafa4b	11: 17596979 ~ 17713987 (-)
ENSDARG00000061256	si:dkey-44g23.5	22: 26822332 ~ 26834043 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	NA	NA	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	NA	NA	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000074564

EXPRESSION

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