Fish Single-cell RNA Database

GENE ID: ENSDARG00000058880

Symbol	Location	Gene type	Genome version	Species
cldnj	15: 2631421 ~ 2632891 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000058880 (cldnj), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000112049	cldn15a	7: 20826240 ~ 20836625 (-)
ENSDARG00000101109	cldn15b	5: 53908609 ~ 53955218 (-)
ENSDARG00000042357	cldnk	3: 50123507 ~ 50127668 (-)
ENSDARG00000058930	si:busm1-52i16.2	6: 7287102 ~ 7292221 (-)
ENSDARG00000058937	cldn10a	6: 7299194 ~ 7306056 (-)
ENSDARG00000001771	otol1a	2: 6303639 ~ 6316167 (+)
ENSDARG00000016081	cldn15la	2: 5508542 ~ 5517438 (-)
ENSDARG00000020031	cldn11a	2: 25997426 ~ 26001173 (-)
ENSDARG00000003701	cldng	1: 33645044 ~ 33647169 (-)
ENSDARG00000115234	crygm2b	9: 22068412 ~ 22069364 (-)
ENSDARG00000104528	cldn10b	9: 156142 ~ 159438 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000058880	cldnj	15: 2631421 ~ 2632891 (-)
ENSDARG00000043128	cldne	15: 2638884 ~ 2640966 (-)
ENSDARG00000043133	cldnf	15: 2650787 ~ 2652640 (-)
ENSDARG00000058960	otol1b	15: 1705167 ~ 1711472 (+)
ENSDARG00000100844	cldn15lb	15: 45563491 ~ 45590345 (+)
ENSDARG00000015955	cldnc	21: 25754268 ~ 25756119 (-)
ENSDARG00000069505	zgc:136892	21: 25793970 ~ 25795968 (+)
ENSDARG00000044387	cldn2	21: 38002879 ~ 38009507 (+)
ENSDARG00000014047	cldn7b	10: 22144768 ~ 22150419 (-)
ENSDARG00000030723	cldn11b	24: 26432541 ~ 26441318 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg	NA	NA	NA
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000058880

EXPRESSION

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