Fish Single-cell RNA Database

GENE ID: ENSDARG00000054374

Symbol	Location	Gene type	Genome version	Species
alg13	21: 34233492 ~ 34261784 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000054374 (alg13), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000041199	alg12	4: 27100528 ~ 27109748 (+)
ENSDARG00000019595	senp8	7: 56830881 ~ 56835543 (-)
ENSDARG00000078615	NA	7: 69732435 ~ 69795488 (-)
ENSDARG00000012840	alg9	5: 57743815 ~ 57763179 (+)
ENSDARG00000061061	dpagt1	5: 30588856 ~ 30595372 (+)
ENSDARG00000054963	alg1	3: 28860283 ~ 28869640 (+)
ENSDARG00000087893	rnf216	3: 40600770 ~ 40664913 (-)
ENSDARG00000060398	rft1	6: 40843786 ~ 40854458 (-)
ENSDARG00000017617	alg6	6: 32065094 ~ 32087111 (-)
ENSDARG00000053155	alg3	2: 44972720 ~ 44981344 (+)
ENSDARG00000077722	ppp2r3a	2: 25198648 ~ 25291181 (+)
ENSDARG00000060177	vcpip1	2: 42072231 ~ 42083513 (+)
ENSDARG00000076499	usp53b	1: 25886437 ~ 25911901 (-)
ENSDARG00000031202	alg11	1: 29750937 ~ 29761086 (-)
ENSDARG00000030177	uchl3	9: 21971260 ~ 21976670 (-)
ENSDARG00000017220	otud7b	16: 45930962 ~ 45982657 (+)
ENSDARG00000070399	alg2	16: 27215938 ~ 27224246 (-)
ENSDARG00000016745	slc35f6	20: 25904199 ~ 25910643 (+)
ENSDARG00000063190	zranb1b	17: 8951449 ~ 8976307 (-)
ENSDARG00000011026	zgc:92907	14: 30967442 ~ 30971264 (-)
ENSDARG00000060257	zranb1a	12: 47044707 ~ 47072007 (+)
ENSDARG00000061852	olfml3a	23: 24789205 ~ 24797586 (+)
ENSDARG00000044627	alg8	21: 22892836 ~ 22901407 (+)
ENSDARG00000054374	alg13	21: 34233492 ~ 34261784 (-)
ENSDARG00000059774	dub	21: 22917221 ~ 22951646 (-)
ENSDARG00000008542	yod1	11: 37708384 ~ 37720266 (-)
ENSDARG00000004363	lhfpl6	10: 31938796 ~ 32041846 (+)
ENSDARG00000103093	alg14	24: 31201195 ~ 31223232 (-)
ENSDARG00000079835	man2c1	25: 26811170 ~ 26824509 (+)
ENSDARG00000045606	alkbh3	25: 30233638 ~ 30264796 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000054374

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences