Fish Single-cell RNA Database

GENE ID: ENSDARG00000091557

Symbol	Location	Gene type	Genome version	Species
mmp19	11: 3279039 ~ 3291771 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000091557 (mmp19), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000019420	etnk1	4: 16885854 ~ 16906923 (+)
ENSDARG00000105529	vgf	7: 26224211 ~ 26230166 (+)
ENSDARG00000092162	mhc1zaa	3: 346530 ~ 367405 (-)
ENSDARG00000075261	timp2b	3: 57632965 ~ 57666996 (-)
ENSDARG00000061140	colec12	2: 31382590 ~ 31435158 (+)
ENSDARG00000103519	adamts1	1: 673163 ~ 681116 (-)
ENSDARG00000104340	rspo1	16: 33772902 ~ 33817828 (-)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000013771	ctss2.2	16: 29514473 ~ 29519977 (+)
ENSDARG00000026325	mmp11a	8: 30797363 ~ 30825415 (+)
ENSDARG00000073870	gdpd2	14: 33219370 ~ 33265068 (-)
ENSDARG00000052855	ctso	14: 36752033 ~ 36763302 (-)
ENSDARG00000068710	nid1a	13: 50064464 ~ 50139916 (-)
ENSDARG00000068382	pglyrp5	18: 40902636 ~ 40905901 (-)
ENSDARG00000102447	gdpd4a	18: 3332999 ~ 3356487 (+)
ENSDARG00000061226	timp2a	12: 33990947 ~ 34035364 (-)
ENSDARG00000074306	ctslb	12: 16691584 ~ 16694092 (-)
ENSDARG00000079293	gdpd4b	21: 22311964 ~ 22325124 (-)
ENSDARG00000091557	mmp19	11: 3279039 ~ 3291771 (+)
ENSDARG00000071558	fblim1	22: 158112 ~ 164944 (-)
ENSDARG00000070826	bpgm	25: 20116407 ~ 20127087 (+)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	NA	NA	NA
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture	NA	NA	NA
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000091557

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences